RnoINT0048814 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107110331-107112531:-
Coord C1 exon
chr10:107112309-107112531
Coord A exon
chr10:107110448-107112308
Coord C2 exon
chr10:107110331-107110447
Length
1861 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTGGCCTTCGCCTCCCACAGGAG
3' ss Score
9.25
Exon sequences
Seq C1 exon
CCTTGCCGATCTGGAAAGCTTCATGGGTGTCACCCGGACTGGCCTAAAGAAGCCACTCAAGGAGGGAGACTATGACGGACTGGTGGAGGTTATGGGGCACCTAATGAAGGTCAAGGAGAGGCAGGTGGCCACCGACAGCATGTTCGAACCCCTGAAGCAAACCATCGAACTGCTCAAGTCCTACGGGGAGGAGATGCCGGAGGAGACCTACTTGAAGCTGCAG
Seq A exon
GTGGGTCCCAACAGGGCTGTGCCAGGCAGGTCACTGCAGGCTAGACACCCAGGAGACTCTGGATCCCCCCCCCCGGGGGGGGGGGGCTGGGCGTGTCGAGGTCGGTCCTGCAGAACGAGCAAGGGCCAAGGTGGTCCCCGAGGCTGGCAAGAGCCTTCTGATGGATTCGTGGGGTTAAGGCCATCTCCACGGCTCACCTCTCACTCTGAATGTGGAGGTCACACACCTCAGATGAATGTGAAAGGTGATGGTGACTGGAACAGTGAGAGGCCCTGGAGATGAGTGACTGCAGGGGGCCACGGGAGGCTGCCTATGGTCCCCGAGGCTGGCAAGAGCCTTCTGATGGATTCGTGGGGTTAAGGCCATCTCCACGGCTCACCTCTCACTCTGAATGTGGAGGTCACACACCTCAGATGAATGTGAAAGGTGATGGTGACTGGAACAGTGAGAGGCCCTGGAGATGAGTGACTGCAGGGGGCCACGGGAGGCTGCCTATGCCCGACCATCCACTGCTCACATGACAGCCATTGTCAACATGATAGAAGTCTATGCTGGCTGAGCTGTAGGCTGAGCAGGATGGGGGAAGGCCCTCTGGAGGGCCTCCAAGGAGCCACCCCCAGCCCCAGCTGTGCCTGACTGCTTGTTTTCCCAAGCCCCTCAGCTTCCCTCCCTCCCTCCTTCTCTCCCTCTCTCTTTACCTCCTTCCCAGTATCCCTCTCCCCCTCTCCTCCCCCTCTCTCTCCCCCTCCTTCCAACCATCAGTCCTATTTCCCAGCTGCATGAGGTCCGCTCCCCTGTTTGTATGCACCAACTCTAGCTAGGCCCAGACCCATGGCTCAGGAGCAACAAGGGACAAGGAGCCATGGACCCATGGCCCTGCCATGCAGTTAGCAGGGTGGCCCTATGCTATAAGGGGGCCTACCCCAGAGTCTCTCAGGTCTGAACCCCAAGCAACAGGCCTGTGCCTGCCCCAACCACCCTGTTCAAGATCCAGTTGAAGCCAAAGGGCTCGGAAGCCTGTGACCAGTCCTTAGGGGTTCCCAGGCCATGCAGGGGTAGAGCTGGGATATGAGGGTGCCGCATAACAGTAGGTCATAGAGGAGCATCTGTCTTCTCCTGATCAGGGAGGTTCAGTGGCCTGGGTGGTAAAGTTGTTTTCTTTAAATATTTCCTGAGGGTGGAAATTACCCGGACCTCTGCCCATGATAAAAGGCTTAAAACTTATACACCGGTGTGGAGGCACACGTGCGCAAATGTAATGTGCATACAGGTGTTCACACTCACACACGTGCATAAAGGCACCTACAGAGGTGCACGCATGCTCGCACATGCATAAACGCACACTAAGGCACTCATGTGCACCTGTACATCCATACACGCGTGCACACGCATGCATACGCATGCACATCTGCGTGGTCACACATGCACAGCACACACACACTACGGATGGGTTCAGGCTGATGAACACTGCGAAAGGTAGAGGAAGGTCTGGTTGGCAGAGCTCACTGAGCTGCTGGCTCTGCCATTGTGGGGCTGGCTGGGGACAGCATGAGCAATTCGTATTACTTTAAAAGTCTCTCCTGGGCCTTCGGTCGGTGTCTCAGCAGAGCGTTCTAGAACGGGAGAGATGGGGGCTCAGGAAACGGCCTCGCTACTTTTGCAGAGGACTTGTTTTCAGTTTTCAGCACTCAGGTGGCAGCTCACAGCTGCCTGTAACTCCTGTTCCAGAGGCCCAGCATCCTCCTCTGACCTCTCTGGGCACTGTGTGCATGCAAACACTCAACACGTTAAATACTTAAATAACCCCAATGGCAAAATGGAGGCAGACACCCCCCCCTCCCCTGGCCTTCGCCTCCCACAG
Seq C2 exon
GAGCTTCCAGAGCAGTGGACCAACACCAAGAAACTGGCCATTCAGGTGAAGCAGAATGTGGCGCCACTCCAGGCCAACGAGGTTAACATCCTGAGGCGCAAGTGTCAGCAGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCGATCTGGAAAGCTTCA
R:
CTCAAACTGCTGACACTTGCG
Band lengths:
338-2199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]