GgaINT1013385 @ galGal4
Intron Retention
Gene
ENSGALG00000005850 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr8:12819888-12823011:-
Coord C1 exon
chr8:12822853-12823011
Coord A exon
chr8:12819903-12822852
Coord C2 exon
chr8:12819888-12819902
Length
2950 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TTTTCAAATGAACTGTGCAGTGG
3' ss Score
2.51
Exon sequences
Seq C1 exon
CCACAGTCCCCACCCCTAACCCCTACTAGTTTATACACATCCAGTACTCCTAATGGGTCCCAGTATCCCATATTCTCCATTGAACCAGTGCATTATTGCATGAGTGACATAAAAACAGGGAAGCCCAGAATTCCTTCTTTCAGAAGCCTCAAAAGAGGG
Seq A exon
GTAAGTTGGATAAAAAGTTGAAATGCATGATGGGCTATGAACAATGTGTTTGTGATGTGGCTTTTCTAATGCTCTTCACCCTCATTATAAGGCTTATGCTTTTTTAAGTAATACTCAGCTATAAGGTCACTTTTAGAATACTGTGGTGGTTGTTGGTTTGTGGGTTTTTTCATGCTATACGGACCTTACCAACAGATGAAAATTAAAATAATAGAAATATAAAATTCCATACGCTTATGCCTAAAATAAAGGTGTTATAAAGAGGGTGCTCAGCATGTTTGATACACTTTTTCATTGTTGTTCACATTCGCAAATGTTTTCCTACCATCATAGAACATATTTTTGCAGTACTACATCACAATATATAAATAGTATCCATAAAAAAGCTTACAGATCATCACTTTATTTGCTGACTTCTAATAGATATAACAGTAGTTGATGTTGAGACAGAACGGAGGATGGAGAAGTTTCATTTATTTTTTTATACATCAAATGTTTCAGCACACAGGGCTTGTAGATTTTGCAATTCTGATTTTCTGAAAAATTACCCTCTTACTATTATGATTAACAAATTGTTTTTCTTTGTCCAAGGTACTTTTGGGTAAAGGTATTGAAAAATTACTGCCAAATGCTACTTTCTGAGATTTCTTGATTCATTTTTTCAATTATTAGTGGCATATTCTGCAAATAGAATTTGTTTGGAAGACAACAGAAGAGAATTGTTAAGTGGTTTCTTAGCAACATCTACAGTACAAGTGAGAAATGTATTAGCACTTTCCTGTTATTTCAATGAAATACAGGCTGCCCAGTTTGTGTGTTTTAAGATGCTTCATGATCTTTATAATGAGATAATTGGACGTATCTGATTATATTTAATTCATGATTTTCTCATATTTGAAAACAAAATCAGCTTGCTGTCTCGTGTGCATCAAGAATGGCTGGTTACTGTAACGTGGAGATCAAAGTACAATGTAGTATTGCAGTGAAGTTAATGATTTAGAGGCTCTCTTGCTATCATTTAGCAATGAGTTATACTTTAATCTGCTTTATTTAAATCATGTTGTGGCATCTTATATCAGGCCCCCAGATATTTTATATGTATTGATGAAGGGAAGCTTCTTTTATTTTCTGAATTACATTATAATCTATTTTGGCTGTGAAGATCGTATTCCTTCCTCACCTACTCAGTGAATAACCAAATTAAAGTTGCTGAAGTAGCAAAGATCTTGATTAACCCCCACCTTTTTGATTATTATTGGATATATCAGCTCCTCACAAACTGACACCTTATAACCTTAGTAGGTCTAGAATTTGTTACTGAAGCAAAAGATAGAACAGTATTCTGTAAGATTAATAAGGCTTGCTAATATCATCCAAATGTGGATTATCTCAATTGTCCCACAGTATCAAGTATTTTGAATTTTCAAAGTCTTCCAGATGAACATTTTGTTTTATGTAGTTTGAAAACCTTGCAAACATTTTAAGACATCACATATCGAATGTCTTTAAATGTGTACTGTAATTTTAATAGATTTTATGTCATCGACCAGTTTTATCTTTGTAATACTTTTTGTTCAGTTCTTAATAGTTCCTAATACAAAGTGCTGTTTTCCATGGTTTTGTCCATGGAAAACTATGTCCAAGTAGCATTGACAGGCAGAACTTTCAAATGATATTTTAATTTGCTTTGAGATTTATCCATGAGCAAAGATCAGATAATAAGCATACCGGTTATGCTGTTTTTTATGCCCCAGATGTCATTTGAAGCACGAGAGATCACAAAACCAAGCTGCTCTCATTCTGTGCTCCATGCATTAGAATTTTTCCTGCCATCTGCTGTACAGAGAATGCAGTGTACAGTAGCTGAAGTTATCACTCTATACAAAACAAACAGGCTATGGAAAAAGTCTTAGGTATAGCCACGCCTCCCTTTCATTAATACATTTATTCCATGCAACTTATTATTATTTTCAAAATCTTAACGTTTCCATTTACTTATGAGGTCTTTCCTCAGTGCTACTTGATACATAGATGGTTGTGTTGAGAGCAGTGATACGTAAACCTTATTTTGCATTTTCTTGGAAGGCTCTTTGTAGAGAGAAAATGTAGTTTATTCTGTAGCTATTTTACATCTTTGGACTTTGTTGAGGTTTCTACCATGTTATTATTTGTGAAGGATGTTAATTTTCTTTATTGCTAGAAATTCTAATCATCAACGGTCGTAAGAATCGCTAAGAGTCACATAAACACAGATATCTGTCTGTCTCCTAAGTTGCTTAGCCATTCTCTAGAAAGGCTTGTAAGAGGTCACGGAGAGCATCAGGAATGTTAAAGCAAAGCTATAACACCTCTGCTTTTTTTTATTTACTTCTTCCAGATTGAATAACTAAAACATTTTAGGGTAGGGATGCTGACCCAAATGTTTGTTTACAAAAAGTAAAATCATTACCTTGAAAAAGATCTTTGTTTATTGTAGCTTTCTGTGATAATAATGTGAAAATTACCTTTGTAAAGGTGATAGTAGTGGATTACTGTAAATAACAAATGATTTGCATATGGCTGATAAGTCCTTCATCATCATCAAATTCTGCTATTTTGTGCAGTGTTGGCTGTGTGCGTGTTTCTTCTCCCACAATAAAAGCTTGTTAAGTGTATTATTTGAATGCTCAGATCCAGAACTAGTTTAAAGAAGCCGTTTTATAATTTTCTAAGTTAAACTACCTATTCTCATCTACTGATTTTTTTTAAATCGATCATGATTAATGCAGAAGTGCATTCCTGCTTATTGTCTTTTGCTGTTCTTGTGCTCGTAGTAAAATATATTTTTATAATTTAAAATATTAATACTTAATGCTTTAAAGATACATTTTTAGGCATTAATCATTTTTGTAACTGGTCGTTACATGTGAGTAATTTCCCGTTTCTTTCTGTTTTCAAATGAACTGTGCAG
Seq C2 exon
TGGTCGGTGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850:ENSGALT00000009401:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]