GgaINT1014845 @ galGal4
Intron Retention
Gene
ENSGALG00000004222 | HK1
Description
hexokinase-1 [Source:RefSeq peptide;Acc:NP_989432]
Coordinates
chr6:10482518-10483680:+
Coord C1 exon
chr6:10482518-10482613
Coord A exon
chr6:10482614-10483580
Coord C2 exon
chr6:10483581-10483680
Length
967 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAAT
5' ss Score
4.46
3' ss Seq
TACTGTTTTTCCTCCATCAGGAC
3' ss Score
8.69
Exon sequences
Seq C1 exon
GGCATTCTGATAACCTGGACGAAGCGCTTCAAAGCGAGCGGAGTGGAGGGAGCAGACGTTGTGAAGCTGCTTAACAAGGCCATCAAGAAACGTGGG
Seq A exon
GTAAATTGGGCTTCGTTATTTTTTTTTCCTCTTTTAAGCTCTGCGTCAGAGCAAACTGGTGTTTCTGTGTCAGAGACCTCTCTTCACACCACTGACTTGAGCACGTGGTGTGAGTGATGGTGCACTTGCATGTAGACGTGCTGTTTGCTGGGAAAAATGGAGTGATCTCACTATTACTGCGTGGAAGCTGTGATGCTCCTCATAGCACAAAACTCAGCTACCATGTTGTGGCTTGTTGCTGGCAATCTCCAGCAATTCTGTCACCCTCTAAAAACTCAGGAAGTGCTGCCCTTCAGTGCCACAGCTTTTTCAGCAGTACCCACACATTCCATTCCTGAGAAACTGCATGTCATGGTTTGGGCTCCTATGCAGCAGCTCAGCAAAGTGGTGCAGTGGGCTGACATGGGAGAGGAGCAGAAGAGAAGGGGGGTTTTATGCTCAGTAAGCTGTGTTGTTCCTTGCAGTTTCTCACAGCTGATGTTATGGGGGGTGAAGGTAACCAGGTTGCTGATTTTAGACAAAAAGGCCTCGAGCATGAAATGGGATGAATTTGGGCTCAGATAGTGAGATGGGGGTCAGCCTCTTCTCCCAGGTAATAGCAATAGGGCGAGAGGTGATGCTCAGGTTGTGAGAGATGCTTAGGTTGTGCCAGAGAAGTGTCAGGTTGGGCATTAGGACACATTTCTCCTCAGAAAGAGTGGTGATGCAGTGGCACAGGCTGCCCAGGGAGGCTGGGGGAGTCACTGTCCCTGGAGGTATTGCCAAGCCATGGAGATGTGGCACTGAAGGACGTGGGCAATGGGGGTGGGCAGGGTGAGCTGAGAGGGCTTTTCCAATGCTGATGATTCTGTGATTCTATGATCTTCCCCTCTTCCTTGTGGAATTAATTATGAGCAAGCCAATGACAAACACAAGCAATGTTTTCCAGAGAAGCCATATGGTACAAGTACTGTTTTTCCTCCATCAG
Seq C2 exon
GACTATGATGCAGATATCATGGCTGTTGTGAACGATACCGTTGGCACTATGATGACCTGTGGTTTTGATGACCAACGTTGTGAAGTTGGCTTGATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004222:ENSGALT00000006719:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.0=100)
A:
NA
C2:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTCTGATAACCTGGACGA
R:
TCAAGCCAACTTCACAACGTTG
Band lengths:
190-1157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]