RnoINT0070954 @ rn6
Intron Retention
Gene
ENSRNOG00000046891 | Hk1
Description
hexokinase 1 [Source:RGD Symbol;Acc:2796]
Coordinates
chr20:31937444-31938202:-
Coord C1 exon
chr20:31938107-31938202
Coord A exon
chr20:31937544-31938106
Coord C2 exon
chr20:31937444-31937543
Length
563 bp
Sequences
Splice sites
5' ss Seq
GGGGTAATT
5' ss Score
5.8
3' ss Seq
TCTTCCTTATCGGTCCCCAGGAC
3' ss Score
10.01
Exon sequences
Seq C1 exon
GCTGTACTGATCACGTGGACAAAGCGGTTCAAAGCCAGTGGCGTGGAAGGAGCGGATGTGGTCAAGTTGCTGAATAAAGCCATTAAGAAGCGAGGG
Seq A exon
GTAATTTCTCTCTTGGGTTGTGCATAAGTCCGGTATTGGGGGGAAATCTCCGTCTTAAAATGGTTTAAGGTTCACATTGTCAGGCATGGAGGGGCACTGAGGGTGATGGCCTTAATACCCTAGCAGGGGACAAGAATCCCAGGCCAGGGAGTAGGTCAGATGTGAGCTCTCAGAAGTGCCACCAAAAGGTATCTAGTCTGCAGCTGAGACCATCCATGTGTATTCCGCAGGGATTCCATGTTGTTCCGCAAACACGCAGGGATTAGAGGGAGGAGCTGCCTTGCGCATGCGCATGTGATTCTTAGGCTCTCCTTTGGAGGCTTGCCCGGGAATGTAGCTCCATGAATAAAATTCACTCCCCGAAGAATCCTAAGCCAGATAATTAAGGGGACCTTGCAGTTTCCATAATGTAATCACTGCTGTCTAATCCAATTAATTGAGTCCTGGCCGCAGTGAAGCCACCCATCAGCATGGTGGCGTGTGAGAATTGGAGCATGCCTGGTTGGGATTTCTGCGCCCATGTGGGAACTGATGGTGACATTCTCTTCCTTATCGGTCCCCAG
Seq C2 exon
GACTATGATGCTAACATTGTCGCCGTGGTGAATGACACAGTAGGGACCATGATGACCTGCGGTTATGATGACCAACAGTGTGAAGTCGGCCTGATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046891:ENSRNOT00000072429:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.4=100)
A:
NA
C2:
PF0034916=Hexokinase_1=PD(11.4=67.6),PF0372711=Hexokinase_2=PU(10.1=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTACTGATCACGTGGACA
R:
GATCAGGCCGACTTCACACTG
Band lengths:
192-755
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]