GgaINT1015717 @ galGal4
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4563846-4564478:-
Coord C1 exon
chr26:4564383-4564478
Coord A exon
chr26:4563974-4564382
Coord C2 exon
chr26:4563846-4563973
Length
409 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TATTCTACCCTCTGGTGTTGTAG
3' ss Score
-4.05
Exon sequences
Seq C1 exon
ATGACCCCTTGGGGATGCAAAGGAACATGGAGACCTTCATGGAGTCCTGCAGTGGTGACAAAATTAGCTGCTCTGCTGTGCCCACTGCCTTGCAAG
Seq A exon
GTAAGTGAGCTCATCAGAAAGGTCAGTGTTGTTAGCAGCAGGGTAGCCTTACAGCCTTGTTTGTCAGTGAGCTCAGAAAAATCCTACAAAAGACTGAAAGGTGGAAAAAATAGCCCACTTTTTGGCACATATTAAGCAAAAGGCCTGCAAATTCTGCACTCCCTTGCGTAAAAATGTTGAAATATTGATTTAATTTGGTCATAAAGAAAGCGAGTGCTTTGGGGGTGCTCAGCCAAACACCTCCATTGCAAGGAGGAAGATGGAGGAGATGCTGGGATGCTTGGGAGCTCCCATCTGGGGCACTGCATCACTGCAGCTCATCCTGGGGCTCTGGATTCTTTGCTATGGGCTGGTTCTTCTGCCCTGTCTGTGCTCTGGGTTTGTGCTTTTATTCTACCCTCTGGTGTTG
Seq C2 exon
TAGAAGCAGACACTGACCAGTGGGAACGAGCCTGTGACACGCTGCTCATGTGCATTGTCACTGTCCTGAACCACGGCCTGAGGAATGGAGGGGGTGTAGGGGACATTCTGCGCAAGCCGTCGAAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(14.2=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(18.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGATGCAAAGGAACATGG
R:
GTCCTTCGACGGCTTGCG
Band lengths:
215-624
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]