RnoINT0076775 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5708164-5708484:+
Coord C1 exon
chr20:5708164-5708268
Coord A exon
chr20:5708269-5708356
Coord C2 exon
chr20:5708357-5708484
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AACGTACTGACCGCCCACAGAGG
3' ss Score
5.71
Exon sequences
Seq C1 exon
CCAGCACCCTGGGGATGCCACACGGAGCTGCCACATTTATGGGCACATGTAGTGGGGACAAGATGGACTGTGTCTCTGAGGTCTCGGTGCCTGAGATCCTAGAAG
Seq A exon
GTAAGATGACTCTAGCATCTGCAGGGTGGGGTGGGGTGGGCGGGGCAAGATGGGCAGCGCCAGGTCCCAACGTACTGACCGCCCACAG
Seq C2 exon
AGGACGAGGAGCTGGACAGCACAGAGCGGGCCTGTGATACTCTGCTTATGTGTATTGTCACCGTCATGAACCACGGACTGAGGAACGGTGGCGGCGTGGGCGACATCCTCCGCAAGCCCTCCAAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(15.3=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(18.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGCTGCCACATTTATGG
R:
TCCTCAGTCCGTGGTTCATGA
Band lengths:
168-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]