GgaINT1015896 @ galGal4
Intron Retention
Gene
ENSGALG00000027043 | KCNH2
Description
potassium channel, voltage gated eag related subfamily H, member 2 [Source:HGNC Symbol;Acc:HGNC:6251]
Coordinates
chr2:335719-336833:+
Coord C1 exon
chr2:335719-335910
Coord A exon
chr2:335911-336664
Coord C2 exon
chr2:336665-336833
Length
754 bp
Sequences
Splice sites
5' ss Seq
AATGTGGGG
5' ss Score
-1.57
3' ss Seq
CACCTCGCTCTCTCCCGCAGGTT
3' ss Score
12.38
Exon sequences
Seq C1 exon
GTTGGAGACGCGGATGGCGGCGGACATCAGCTCCATCATGCAGCTGCTGCAGCGCCAGGCTGCTCTCGTGCCCCCTGCCTACAGCACGGTGTCATCCCCCCATCAGCCTCCGGGTCCCCCCCCCTGCCCTCTGCAACCCATCCTCCCCATCACCCCCATCCAGCCGCTCTCTCAGGTGAGCACCCCCAAAAT
Seq A exon
GTGGGGCAACCCCGCAGCCCCTTTCCCTGTGCCCCATTTTCCAGCTCTGTGGCAAGCCAGCACCGCTGCAGAGACCCCAAGATTTGGGGCAGCCCCTCTCTTTTGTCCCACCTTTCAGCCCCACACTCTGCTAGAGTCACTCCTGTGCCCCCCAGGTGTGGGGTAGCCCTGCTCCTATGCCCCATACTGCAGCCTCACTGTGAGCTGGGGTTAATGCCCTGCCCCTCAGCTTTAGGGCAGCCCTTCTCCTAGGCCCCGTTTCCCTTTCTTCTTTCCCCATGGTGAGCTGGGGTGACTCCTGACCCCCCACGTTTGGGGCAGCTTCTCTCTCCTGTCCCATTTTCCAGCCCCACAGCAAGCTGGGGACACAGCTGAGTGCTCCACATTGGAAGTAACCCTTTTTCTGAACCCTATTGTCCAGCTCTATGGAAAGCTGGGGGGCCACTGCTGAGCCCCTCATGTCTGAGGCAGCCCCTGTCCCGTGCCCTATCCCCTAACCCTAACCTTCCCCACAGTGATCCAGAGTGACTCCTGAGCCCCCTAGGTTTGGGGTACCCCTTCTGCTATGCCCTATCCTGCAGCTCCATGGTGAGCTGGAACCATTGCTGAGCCCCCCAGGGTTGGGGCAGCTCCTCGTGCCCCATTTTTCAGCCCCACGGCTCTCTCCCGTACCCCACGGAACCCATACCCGGGGGGTTCCACCCCACACCCCAACCCAATGCCCCACACCCCCTCACCTCGCTCTCTCCCGCAG
Seq C2 exon
GTTTCCCAGCTTCCCAGTGCCCCCAGAGCTGCGCGGTGCTGGGGGGTCCCCCGCCGCCCCCCGACGTGGTGCTGCTGCTTGGAGCCGTCCCCACGCCGCCGCTCGCTTGCCCGGCCCACTGCCCCCTGCGCAGCCGCTGCACAGACACTGCTCCGACCCCGGCAGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027043:ENSGALT00000045642:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.523 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGAGACGCGGATGGC
R:
GTCGGAGCAGTGTCTGTGC
Band lengths:
349-1103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]