HsaINT1017144 @ hg38
Intron Retention
Gene
ENSG00000055118 | KCNH2
Description
potassium voltage-gated channel subfamily H member 2 [Source:HGNC Symbol;Acc:HGNC:6251]
Coordinates
chr7:150944961-150947054:-
Coord C1 exon
chr7:150946877-150947054
Coord A exon
chr7:150945515-150946876
Coord C2 exon
chr7:150944961-150945514
Length
1362 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ATGCTCTGTGTGTATTGCAGGTT
3' ss Score
10.91
Exon sequences
Seq C1 exon
GCTGGAGACCCGGCTGAGTGCAGACATGGCCACTGTCCTGCAGCTGCTACAGAGGCAGATGACGCTGGTCCCGCCCGCCTACAGTGCTGTGACCACCCCGGGGCCTGGCCCCACTTCCACATCCCCGCTGTTGCCCGTCAGCCCCCTCCCCACCCTCACCTTGGACTCGCTTTCTCAG
Seq A exon
GTAAGCTCCAGCCCTGCTTCCTCGATGTACCGTGACCCGCTTGTTCCCCGATTCCAGCCCAAACCTGCTTTGCTGCCTTTCTGCTGGGCTCTGTGGCCCAGCCTCCCTGAACCTTGTTCCTGCCCTCCTCCCACCCCTGTCCTCCTGGAGGAAGGCTGCTTCAGGAGCTGCAGGCTCAGGGTAGGGCAGGAGAGTCCCCCGTCCAAAGCCCCTAGACAGCTGGGTGCAGGGAACCTGTAGGCTAAGTGGCCCGCAGCTTCACTCCCCTAGTGTCCACAGCCTCCACCGCCAGGCCCCGGAGCATCGCCTGAAGAGCCAGCTCCAACGGTGGTGCCTGTCTCACGGCCACGGGTGGTCTCCAAGAACTGACTGAGCCCGAGACGTGGCGGTGGAGGCTGCATACCAGAGTATCTAGGGACAGGGTCCCGGGTCCCTTCTGTGAGTGACACTCCCTGGTCTCACCGTCCTGCCCATCCTTGCCCTTGGCAGTGGCTGTCACAGGGTCATCTTGAGGGTGCTTGGCATTTCCCAGGGTGCAGAGGCCAAGCCTCCAGGGGAGGACTTCCTGGGCCTGCTTTGCCCCCTCTGCTAGAGATGGGCCTTAGTTGCCCCTTGTCCTCTCCTGGGTGGACCTGCATGTTCCTGGCCTCTGCAGGATGGCGGTGTCTGTGTCAACCTCCGCGTCCATGGTGGGGACTCCTCTGGCTGCCAGAGGCGGCCTGGGATCTGCTCCCTCCCCACTTCCCTTGGCATCCGCTCCCCCCTCCCATATGCTGCCTGCTCCTGTTTGCAGACACGAGGGCCCACGTCAGCAAATGTGCCAGTCTCCCTTCGCAGCCGCCCCCGCAGAGCTCTCACCAGCAGACGCTCAGTACCCACAAACCCCTCCCGCCTGCCCCGGCCCTCTCCCTGGCCTTCAGATGCCTGGCCGCCAGCCTGCCTCTGTTTCTAGGTCCCCGAGTTCTTTCTGGATTGCGGGAAGGAATCTTGTCTCTTTTTCTGTCCCAGCTTCTGTCCCAACACAGAGACTGCTTGTTCCAGGTTGGGTTGGGCTCAGCGGCCACATTCCCTCGGGAAGAGACAGGGGCCTAGGGTTTTCCCTGCTCCCAGCTCTCTTGTTTGGCTCCTGCTCTCAGAGAATGCCTTTCTCTACTTCCCACCTTGGTGCCTCCCCTTGGTGGCCCCTGTCCTGCTCTCGCTGCCTTGGCTCTTGTCCCCTCCAGCTTCTCTGCCCACCTGACTCTCCTCTTGGCCCTCCTGTCCTCCCGTCCATCCTCTGTCCCCGGGTTCTCCTGCCCCTTTCCCTCCCCTTCCTCCTCCTCCATGGCCTCTTCGCCTGCCCATGCTCTGTGTGTATTGCAG
Seq C2 exon
GTTTCCCAGTTCATGGCGTGTGAGGAGCTGCCCCCGGGGGCCCCAGAGCTTCCCCAAGAAGGCCCCACACGACGCCTCTCCCTACCGGGCCAGCTGGGGGCCCTCACCTCCCAGCCCCTGCACAGACACGGCTCGGACCCGGGCAGTTAGTGGGGCTGCCCAGTGTGGACACGTGGCTCACCCAGGGATCAAGGCGCTGCTGGGCCGCTCCCCTTGGAGGCCCTGCTCAGGAGGCCCTGACCGTGGAAGGGGAGAGGAACTCGAAAGCACAGCTCCTCCCCCAGCCCTTGGGACCATCTTCTCCTGCAGTCCCCTGGGCCCCAGTGAGAGGGGCAGGGGCAGGGCCGGCAGTAGGTGGGGCCTGTGGTCCCCCCACTGCCCTGAGGGCATTAGCTGGTCTAACTGCCCGGAGGCACCCGGCCCTGGGCCTTAGGCACCTCAAGGACTTTTCTGCTATTTACTGCTCTTATTGTTAAGGATAATAATTAAGGATCATATGAATAATTAATGAAGATGCTGATGACTATGAATAATAAATAATTATCCTGAGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000055118:ENST00000262186:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.567 A=NA C2=0.789
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCACATCCCCGCTGTTG
R:
AGGAGCTGTGCTTTCGAGTTC
Band lengths:
342-1704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains