GgaINT1015903 @ galGal4
Intron Retention
Gene
ENSGALG00000027043 | KCNH2
Description
potassium channel, voltage gated eag related subfamily H, member 2 [Source:HGNC Symbol;Acc:HGNC:6251]
Coordinates
chr2:334495-335571:+
Coord C1 exon
chr2:334495-334773
Coord A exon
chr2:334774-335384
Coord C2 exon
chr2:335385-335571
Length
611 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
CCCTCTTCCCTCTCCCCCAGGAG
3' ss Score
12.95
Exon sequences
Seq C1 exon
ATGCGGAGGCCACCGGGGAGCCACGTGGTGGGCAGAAGGCGCTGCGGCTGAGCAGGGGCTGCCAGGCACCGGGAGCCCCACGGGGGCTGGCAGAGTGGGAGCCGTGCCACTGCAGCTCGCCCTCCAGCTCCCCATCCAGCGATGAGGATGAGCACCCCGTGCCCACCCCGGGGGCTGCCGCTCTCTCACCCTTCCGCAGCCCCCGGCCCGGCGGTGAAGCCCCCGCAGCCACCGACACTGAGGAGCGCGAGGGCAGCGATATGTGCAACCCCCTCTCAG
Seq A exon
GTGGGGACGGGGCGTGGGGGGGTCCTTGCTTCTCTGCTTCCTGCTCTGCGTGGGCAAAGCATCTCCCAAAGCCCCATCTCCTGCTCTGCATCACCATTCCCCGTGCTCCCACATTCCTGCTCCTGCATCCCTCATCGTGATTCTCCATCCCCGCTGGTTCTGCATCTCCATGCTCCTGCATCTCCCCTGCCATACTCCTGCGTTCCCATGTCTGAAGTTCCTGCATCCCTTCTCCTTCCACATGTTCCTGCATCCCCCTGCCATGGTCCTACACCCCCAATTCCTTCTGCATCCCCATCCCCCATGCAGCTCCTGCATCCCCACACCTCCTCCTTTGTGCATCCCCACATCACATGGTCCTACGCCCCGAATTCCTTCTGCATCCCCCTCCCCCATACAGCTACATCCCCACACCTCCTCCTTTCTACATCCCCACATCCCATGGTCCTGCATCCCCATTCCTTCTGCATCCCCATGCCCCCTATTCCTTCTGCATCCCCATTTCCCCCCTCCCATGCTCCTGCATCCCCATTCCTCCCCCGTCCCATCCTCTCCTCCCTCGACGCCACCCACACCACACCGATCCTTCCCCCCTCTTCCCTCTCCCCCAG
Seq C2 exon
GAGCCTTCTCGGGGGTCTCCAACATCTTCAGCTTCTGGGGGGAGAGCCGGGGGAGGCAGTACCAGGAGCTGCCCCGCTGCACCATCCCTGCACACGCAGCCCTTGGGATCCCAATACCCTCCATGAGCCGCCGGCAGCGCTCTGAGGTGGAGATGCGCCTCGACCTCCTCCAGAAGCAGCTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027043:ENSGALT00000045642:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.894 A=NA C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGCTCCCCATCCAG
R:
TTGAGCTGCTTCTGGAGGAGG
Band lengths:
343-954
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]