RnoINT0077725 @ rn6
Intron Retention
Gene
ENSRNOG00000009872 | Kcnh2
Description
potassium voltage-gated channel subfamily H member 2 [Source:RGD Symbol;Acc:621414]
Coordinates
chr4:7384624-7385185:+
Coord C1 exon
chr4:7384624-7384902
Coord A exon
chr4:7384903-7384998
Coord C2 exon
chr4:7384999-7385185
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CCATTCCTATCTGCCTCCAGGTG
3' ss Score
11.66
Exon sequences
Seq C1 exon
ACACAGAGCAGCCAGGGGAGGTGTCAGCCCTGGGGCAAGGCCCTGCCCGAGTTGGGCCAGGGCCGAGTTGCCGGGGACAGCCGGGAGGGCCATGGGGGGAGAGCCCATCCAGTGGCCCTTCCAGCCCAGAGAGCAGTGAGGATGAGGGCCCAGGTCGCAGCTCCAGCCCCCTCCGCCTGGTGCCCTTCTCCAGCCCCAGGCCTCCCGGAGACTCCCCAGGTGGGGAGCCTTTGACAGAGGATGGAGAGAAAAGCAGTGACACTTGTAATCCCCTGTCAG
Seq A exon
GTAGGCCTGGGCCTTGAGGGTGGGAGTGGGTGTGGGGGATGGGCAGGGTGGCAGGGGCTGGACTTTCTTCCTGACCCCATTCCTATCTGCCTCCAG
Seq C2 exon
GTGCCTTCTCTGGGGTGTCCAATATTTTCAGCTTCTGGGGGGACAGTCGGGGGCGCCAGTACCAGGAGCTGCCTCGATGCCCTGCCCCGGCCCCTAGCCTCCTCAACATCCCCTTGTCTAGCCCTGGCCGGCGTTCCCGGGGTGACGTGGAGAGCAGGCTGGATGCACTCCAGAGACAGCTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009872:ENSRNOT00000013800:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.704
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGCCTTTGACAGAGGAT
R:
AGGGGATGTTGAGGAGGCTAG
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]