GgaINT1016098 @ galGal4
Intron Retention
Gene
ENSGALG00000026986 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr26:1129226-1129933:+
Coord C1 exon
chr26:1129226-1129532
Coord A exon
chr26:1129533-1129740
Coord C2 exon
chr26:1129741-1129933
Length
208 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGG
5' ss Score
4.86
3' ss Seq
CACCCCCTGCATGTGGGCAGCTT
3' ss Score
4.21
Exon sequences
Seq C1 exon
ATGGGGGGTGTTGTTCTCCCTAACCCGGCCCCCAGCAGCCTCGTCCCTAAGTGTGTTCCACAGCATGCTGGGTGCTGTGGGATTGGCACCAGCCAAAAGAGCCCCCATATCCCAACAGCGGCAGCTGAGCTCGCTGGGGGTCCCATCCCCGTGGGGTCTCAGCCCTCCACGCGTTCTCTCTTGCAGTCGGAGTACCACTACGAGTACACAGCATGCGACAGCGCGGGCGCACGGTGGAGGGTGGCGGTGCCGCACACACCGGGACTCTGCACCGGGCTGCCGGACCCCGTCAAGGGCACCGAGTGCT
Seq A exon
GTAAGGTTGGGGTGCGGGGGTGGCCGGGGGGGCTTTGATGGGGTAGACGTGACTTTTCCTAATCCCGGGGTCAACACGATGCTGTCCGAGACACGGAATGAACGCAGCGCTCAGCAGCACGGCACAGGGTGGGGTGGTGGGAGGGTCCTGGAGGCAGAGGCGGTGGTGGGAGGGGGCAGCGCTGACAGCACCCCCTGCATGTGGGCAG
Seq C2 exon
CTTTCTCCTGCAAGGCGGGCGAGTTCCTCGACATGAAGGCGCAGGCGTGCAAGCCCTGTGCTGAGGGCACCTACTCACTGGGCACCGGAGTGCGCTTCGATGAGTGGGATGAGCTGCCCCACGGCTTCGCCAACGTCGCCACCAACCTGGAGTTGGATGATGGCTTCAGCGATGTGGTGGAGAACTGCACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026986:ENSGALT00000043678:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGCAGTCGGAGTACCACT
R:
TCGCTGAAGCCATCATCCAAC
Band lengths:
301-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]