BtaINT0081087 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001136 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr3:34350319-34353121:-
Coord C1 exon
chr3:34352983-34353121
Coord A exon
chr3:34350512-34352982
Coord C2 exon
chr3:34350319-34350511
Length
2471 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGC
5' ss Score
4.47
3' ss Seq
TCCCCGCTCTTGTGTTCCAGCCT
3' ss Score
9.61
Exon sequences
Seq C1 exon
CCCTTCTCTCCCCTGCAGTCTGAGTACCACTATGAGTACACCGCGTGTGACAGCACAGGTTCCAGGTGGAGGGTCGCCGTGCCGCACACCCCGGGCCTGTGTACCAGCCTCCCCGACCCCGTCAAGGGCACCGAGTGCT
Seq A exon
GTAAGCAGTCCTGCCTCTCAGCTTTGGCCTCTGCCCCAAGCCCCCTACCATCCGAGTTAGGCCCTTCCTGACAGTGCGGCTGCCTCAAGGAATCAGATCTCCCCACCCCTGCCTCCCCATCCACCAAATCCTGAGATTTGGTGCAGGAGTGCTATTTCATGGATGGGAATCTCAATTTATTTTTCTTTTCAAATTTAAATCCCATCACAGTATAAAGTAAAAATCATTCCAGCTGTGTGTCACTTAGATATTTTTCTCTGTTTGCATACATTTTCTGTTCTGGTCTGTGCATTTCTCTCCAGTCTACACTCTCCAGCCACAGTCACTCATTAGGAAAGACTGTGATTTGCAGTCGTTCTTGAAAAGGAAGCCAGAGAAGATAAATTTCTGCAGAGACAGATCTTTAAAATGCACTGGGCATCACTTCAGGGAACAAGAATGTTCCCTGATTGGGGAGCTGACCATGCAACCGGAAAGGCAGTGACTTGCCTGCAGCTCCTATTCCCTCCTCTAGGACTCTGTAGCTACAACTTTCCTATCACTAGCAGCTATTTACCCTGTGCTGTTCCTTTTAGAAAAGGCAAAAACAAAATATTTTTTATTTTTAACAATAAAGATCAGGAACTAGACTCAAGGAATCTTTGATGATTTGGAAAGGAGATTGGGGGCATTTAAAATCTAAAATATGCTTAGCCTAGTGCCTGATTCAGTAGGTGAGCAAATAAATACTTGTTAAATCAATAAATGGATATTGCTAAGATCTGAGTATTAACAGAAACAAATCAGCCATCTTCAGTAAACTTGGCCAGTGTTCTTAATATGTGCACCTGCGATGTGAACCACAAAGATAAATAAGGCACAGCCTCTGCCTTCAGAAGCGTACAGTCTGGTGGGAGGAGCAGACATCCGTTTATCCATTCATTTTTTCAGCAAACCTTAGGGGAGGTCCTGCTGTGGCTGTGCCGGTTGCTGAGCCACCATGCCTGGAGGAGCTCAGAGCCTGGTAGGAGGCACACATCAGTATGATGTGTTAGATGAGGTGAAAAGAATGGGCCTATGGATGCTTAGGGATCAGGAACAGCTGGGTGAACCACTCAAGCAAAAGCTTGGAGGTGGGAGACATCAGACACATTCAGAAAAGAGGATGTGGCCTGAGGTGGAGACAACACAGGGAGGGGATGGATGGGAGTGGGGTAGAGGAGGGTCTGGAGTGCAAGATTAAGCCAGTTGGGGTTAGGTTGGGGGAAAATTGTAAAAGACTTTGAGTGCCAAATTGAGAGCTTAAGTCTGTAACCAAAAGTTGGTGGGTGGTGCCTGATTATTTTTTAAATAACAGAAATAATAGTATGGGCTTCTCTGGTGGTTCAGTGGTTAGGAATCCACCTGCCAATGCAGGGGTCATGGGTTCAATCCCTGGACTGGGAAGATCCCACATGCTGCAAGGCAACTAAGCCTGTGCACCACAACTACTGAGCCCTTGCACTTCAACTACTGAAGTCTGCTTGCCTGGACCCCATGCTCTGCAGCAAGAGAAGCCACTGCAATGAGAATCCATGCACCACCACTAGAAGAGTTGCCCCAGCTCGCGGCCACGAGAGAGATAAAGACCCAGTGCAGCTACACATAAATAAATTTTAAAAAGAAATAAGTATGTATCAGTATTTTAGAAAGATACTTCTGACCACAGAATCAGCAAAAACAAGAAATAGGCAACTCGTTAGGAGGACGTTGCAATGGTTGAGCTCACCTAACAGATCACAGTAATCCCAACCAGCATGGTGCCAGTGGGACCAGAAAGGAGAAGACAGAGGCCAGAGACAACAGGAAATCCAAGGCCGAAACGCCAGGCGCCCTTCAGAGGGGTCAGAACGAGAGACTCTGGTACCCTCTTTTACTGGGGAGCTCTCAGAATGGCTGAGGAAATGAGAAGAATAGCCCAAAATGCTGCAACAAGGTCCTACGTCTTTTTTTTTTTTTTTAAATAACAGCTTTGGGAATTCCTTGGGAGTCCAGTGGTTAGGACTCCATGCTTTTATGGTTCAATCTCTGGTGGAGAAACTAAGATCCCACAAGCCATATGGCACAGCCAATAGATAAATCAATGATGATTCACCCCTGTAAGTTCTAAAATTCAATGGTTTTTAGACTATTCACAGAATTACATAATTATCACCACTATCTAATCTCAGAATATTTTTATCACCCCAGAAAGAAACTTCATATCCATTAGCCATCTCTCCCCATGCCCCCTCCCCAAGTCCCTGGTGCCACAGATCTACTTTCTGTCTCTATGGATTTGCCTAATCTGGACAGTCCATGCAAGCGGGGTCATAGAAGATGCACCATGGCTCTTAGTGTGTGAAACCCTTAGGTCTCCATCCTCTGCTCCTCCCTCTAGGATGCCCACACCCGCCCACTTCTAGGTGGCAGCAGCCTCACCACCTGTCCTTGTCCCCGCTCTTGTGTTCCAG
Seq C2 exon
CCTTCTCTTGCAAAGCTGGGGAGTTTCTGGACATGAAGGACCAGTCGTGTAAGCCGTGTGCTGAGGGTCGCTACTCCCTTGGCACAGGCATCCGGTTCGATGAGTGGGATGAACTGCCCCATGGCTTTGCCAGCCTCTCAACCAACATGGAGATTGAGGACAGCACCTTGGAGTCCACCGAAAACTGTACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001136:ENSBTAT00000001511:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]