GgaINT1016101 @ galGal4
Intron Retention
Gene
ENSGALG00000026986 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr26:1132610-1132897:+
Coord C1 exon
chr26:1132610-1132747
Coord A exon
chr26:1132748-1132837
Coord C2 exon
chr26:1132838-1132897
Length
90 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
GATGCTGAGCTCCGCTCCAGGGC
3' ss Score
1.45
Exon sequences
Seq C1 exon
GGCATCAACTCACGCACCAACACGCCGGTGGAGACGTGGACGGGCCCCCGGGGGAAGCAGTCCTACACTTACGTGGTGGAGAAGAATGCCACCACCAGCTTCACCTGGGCCTTCCAGCGCACGCGCTACCGCGAGGCG
Seq A exon
GTGAGTGGGGGCACAGGGATGGGGACAGCAGCGTCACCCCCCCCCGCCCCCGTTCCACCCAGCACTGGGTGATGCTGAGCTCCGCTCCAG
Seq C2 exon
GGCCGGCGTTACACCAGTGATGTGGCCAAGCTCTACTCCGTCAATGTCACCAACGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026986:ENSGALT00000043678:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAACTCACGCACCAACAC
R:
GGAGTAGAGCTTGGCCACATC
Band lengths:
175-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]