BtaINT0081090 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001136 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr3:34327640-34328840:-
Coord C1 exon
chr3:34328703-34328840
Coord A exon
chr3:34327904-34328702
Coord C2 exon
chr3:34327640-34327903
Length
799 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
3' ss Seq
TCCTGTGTCTTTGTTTCCAGGGA
3' ss Score
11.05
Exon sequences
Seq C1 exon
GGTGTGAATTCTAGGACCAACAGTCCTGTGGAGACGTGGAAAGGTTCTAAAGGCAAACAGTCTTATACCTACATCATCGAGGAGAATGCTACCATGAGCTTCACCTGGGCCTTCCAGAGGACAACTTTCCATGAGACA
Seq A exon
GTAAGCTCCTCCCCTTCCTCAGGGCTCAGCACCCAGAGAGACCTCCTACCCTGGAAGGATTCCTACCTTAGCTTAAGCATGTGGTTGAGCTTCAGAATCCAGTGATTAGAAGACTTGTAAGGAGTCAAGCAGAGGACTGCCTATGCCAGCCCCTGAGGAGCATCCAGCCTTGTCCAAATGACCCTGGAAACTCCTAAAATCACCTGTCCCTCCTCAGGAGACCGGTCCTGAGGATATATGTCCTGAGAATAGGATATATGTGGTACCTGACCTGGTGTGCCCTGTTCAGTCCTGTTCTTGCTTTAATAATAATAACTCTGGTTTTATTATCTTAACTCAAAGTAATGTAAGTTCACTGGAAGAAAACTTAGAAATAAGTGAAAAAAAAAAAAAGCAAAAAGAAGAAAACCACCCATAATCTTACTACCCAGAGATAACCTAGTTAGCATATGGAGTATCTTCTATACAGTCTTTATTTCACTATAAATACTTTTTTTTTCTTTTATAAGGGGAAAAAATCTGCTTTTTAAAAAATGTGAATACCTACTACATATTTCCCCATGGTACTGAATATTTTTATACATCATCTAAATTGTTCAGTCCTTACTTTAAAATGACAAAAAATGCACATCAAAAGATACTGTTAGGTGAGTGAAAAGAACAGGGTGCTTCTAAAGATTTTTCTCAAGTATCACAGGATAAAAAAGATTAAGTCATACTCTGTTATTTCCAGAGCACTCAATTGCTACTTCTCAGGCCAAGGCAGGCCAAGCTCACTCTCCTGTGTCTTTGTTTCCAG
Seq C2 exon
GGAAGAAAGTATACCAGTGATGTCGCCAAGATCTACTCCATCAACGTCACCAATGTCATGGATGGGGTGGCTTCCTACTGCCGTCCGTGTGCCCTGGAAGCCTCTGACATGGGCTCCTCCTGCACCTCTTGTCTTGCTGGCCACTATATTGATCGGGATTCAGGAACCTGCCACTCCTGTCCCCCTAACACGATCCTGAAAGCCCACCAGCCTTATGGCGCCCAGGCCTGCATGCCCTGTGGTCCAGGAACCAAGAGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001136:ENSBTAT00000001511:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076998=GCC2_GCC3=PU(80.4=46.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGAATTCTAGGACCAACAGT
R:
GTGGGCTTTCAGGATCGTGTT
Band lengths:
345-1144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]