GgaINT0113146 @ galGal3
Intron Retention
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8104325-8105512:+
Coord C1 exon
chr1:8104325-8104462
Coord A exon
chr1:8104463-8105248
Coord C2 exon
chr1:8105249-8105512
Length
786 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TTCTTTGGGTCTCGTTCTAGAGC
3' ss Score
8.78
Exon sequences
Seq C1 exon
GATATTAATCGAAAAAATACTAATGTGGTGGAGTCATGGGAAAGAAGTAAAGAGAAGCAATCCTACACTCATATAATCTCCAAAAACGCTTCCTTCACCTTTACTTGGGCCTTTCAGAGAATAAATGAGGGCCAAGAT
Seq A exon
GTAAGTACTGTCTTACAACATGGCTTCCTTTGGACACTCACTGCCTGTTCTCTTGCCTTCTATTAAAGCTCACAGGCTTCTTGTAAGGGATGAGTGGCTGTTAGCAGATAGGTTGTTGTGGTTTAACCAGACAGGTGGCCCAGCACCACACAGTCATTTGCTTCCCCCCCCGCCCTTCCCAGTGGGATGGAGAGAGAGTCAGGAATAAAAAAAGTAGATCTCATGGATTGAGATATAACTATTGATCCAGATAGAGAAAAGAAACAGGACAATAGTTACGATAACATACATACATATATATATATGTGCATGCATATGACAAGTGATGCACAAGTAGTTGCTCACCGCCCCCTGACTGATGCCCAGCTACTCCCCTGAGCAGTGGAGGAGAGAGAGGTGAACTCCCATCCACTTCAAAACTCCTTCTTCATGATGGCATATGGTATGGAATATCCCTTTGTCCACTTTAAGTCAGCTGTCCTAATTCTGTTCCCTCCCAGCTCCTTGGGCCTTTTGCTGAGAATGGCCTTGGCTCTGTACAACAACTGCTTAGCAGCAACTATAAACATTGGTGTGTTATCAACATTATTTTTCTCCTAAAACCCAAGCGTAGCATCACACCAGACTGTCTGAAGAAAAAAATTGCATCCCATCTGAAACTAAGACATAGGGTCACTCAGGAAGGAGCTGTGGGTAAACCACCCATGCTGGAAGTGCATGCATCACTCAGTGTCCGTGTGCAATGGTGCGGTGGCACCAGGGTGGTTTCTTTGGGTCTCGTTCTAG
Seq C2 exon
AGCAGGCAGTTCATCAATGATGTGGCAAAGATCTACTCCATCACAGTGACTAACGCGGTGGATGGAGTCGCCTCCTCTTGCCGGGCCTGCGCTCTGGGCTCTGAGCAGTCCGGCTCATCCTGTGTGCCCTGCCCAGTGGGACACTACATTGAGAAGGAGACCAGCCAGTGCAAGGAGTGTCCAGCCAACACCTTCCTGTCCATCCACCAGGTCTATGGCAAGGAGGCCTGCATTCCATGTGGGCCTGGCAGCAAGAGCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606:ENSGALT00000010664:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076998=GCC2_GCC3=PU(80.4=46.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTGGAGTCATGGGAAAG
R:
CATGGAATGCAGGCCTCCTTG
Band lengths:
354-1140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]