HsaINT0086703 @ hg19
Intron Retention
Gene
ENSG00000164659 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:21945]
Coordinates
chr7:86542257-86544176:-
Coord C1 exon
chr7:86544039-86544176
Coord A exon
chr7:86542521-86544038
Coord C2 exon
chr7:86542257-86542520
Length
1518 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CTTTATGCTCTTTTTTTTAGAAT
3' ss Score
10.28
Exon sequences
Seq C1 exon
GATATTAATAGAAAAAGTACAAATGTGGTAGAATCGTGGGGTGGAACCAAAGAAAAACAAGCTTACACCCATATCATCTTCAAGAATGCAACTTTTACATTTACATGGGCATTCCAGAGAACTAATCAGGGTCAAGAT
Seq A exon
GTAAGTTCCAAGCACTTTTTTTTAAAATTTTAAACACACTAATGATGCCCCCTTGTGGAGATGCATACAAAGTGATAACTCAAATTTGGAAGAAAGGACTGCTTTTTAAAAAATATGGAATGAATAATCTGGTTATAGATTCAGTGGTATAAAATGATAATTTTTTATTTTTTGAGAGTAAGAATGTATGGAATAAAATAACAACATGTCTTTGAATTGTTCTTCACTCTGAACAAATACAGTTTTTGGAAACTTATGAGAAGGAAAATCTAATTTTGCAGTTCTCTAAAAATAACTTGTTTTTAAAGCTTTCTGAGGCTTTGTGAAGATGGGCAACTTTCTTCATCTTCATCTGAGTCATCTAATGTTTAAGAGCCATTAACTAGTGTCATTTTATTTTTTTGTTACAGTAATATTTCCTTTTACAGCCTGGAGAATGTGTATGTACCCACCATTGAGTTAACACACAAAATCATTTCCTTTCTTTTATTTTCCCTGCCAGAATAGACCTATTCCTCCCCTAAGTATATCCATTGTACCATATGTTTCAATAGTAGCAGGACTTATTTTGTGGATCTCTATAGATGTAACCTTCCCAAGGTGAGAACAAGATAAACCACTTGTTCAAAAGTGGCCGTAATGCTATGGTGGCAATGTATGGCATTTTCTCTTCTTCTCTTCAGGCTTTCAGTGGGGAATAAATTCCCCAGATTGTACTTGACTCCAGTTATTCCTTATGAAGGTTAAGATAACCATCCTGTGGGGCGTGAACATGCTGTGGAATCTTTCCTTGCCTTCCATTTATCTTTGTCCCAGACAAAAAGCATTAAGTAGTCTGGAGTAACACTGCTCTGTACCGATAGAGTGACGCCAACTGCTTAATTAAAACCAGACCTTAAAGTGACTCAGTGTTACAAGGAGGAAAAACATAATAAGACCCAGGTTTTTGCTCTCTAGTCCACATCTTTTCTGTATGTTGATTAGGGAAAGGACTGGAGAAGGAAAGGAAGACTCAATGAAATGGTGTGATTGCATTGATTTAGCACAGTTAATGTTTGTGTATGACTAGAGGTCCTAGTCTTCCAAGATTTTCTCATCCCCATTCCAAGGCATTTCTACCCTGCCGCACTTTCAACCTCCTATTGTATCATTTGATTTAGGCTAAGATGTGAATAAATGATGATGGGAGATAAAAACTGTTCCTCTCTTAAACTATACTAGTTCTTCTAGATATGAGGTCTATAATTGCATCCTAATTTATACTAATTGTGACAGATCTCACAGTAATTGTGGCAAAACTCCTGGAACTATATTATTGCAGAAATTAGTTTCTAGTATCAAGATTTAAGATTTTTTAAAAGAAGAACCAAATAGCAGTGATATTAATCTATTGTCAATTACAAACTATTAGGCTGGAACACTCTATTTAGTTATTTTGATGATGTCAACAGAAGACATAATCTGGTTGTACAACTAAGCCCCAAGGCAGAAGTCATTACTTTATGCTCTTTTTTTTAG
Seq C2 exon
AATAGACGGTTCATCAATGACATGGTGAAGATTTATTCTATCACAGCCACTAATGCAGTTGATGGGGTGGCGTCCTCATGCCGTGCCTGTGCCCTCGGTTCTGAACAGTCGGGTTCATCGTGTGTCCCCTGCCCTCCAGGCCACTACATTGAGAAAGAAACCAACCAGTGCAAGGAATGTCCACCTGACACCTACCTGTCCATACATCAGGTCTATGGCAAAGAGGCTTGTATTCCATGCGGGCCTGGGAGTAAAAACAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164659-KIAA1324L:NM_001142749:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076998=GCC2_GCC3=PU(80.4=46.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGGGTGGAACCAAAGAAA
R:
CCCGCATGGAATACAAGCCTC
Band lengths:
347-1865
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)