BtaINT0081111 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004023 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr4:33723857-33725983:+
Coord C1 exon
chr4:33723857-33723994
Coord A exon
chr4:33723995-33725858
Coord C2 exon
chr4:33725859-33725983
Length
1864 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
GTGTGTCCCCTGCCCCCCAGGCC
3' ss Score
9.97
Exon sequences
Seq C1 exon
GATATTAATAGAAAAAGTACGAATGTGGTGGAGTCATGGGGTGGAACCAAAGAAAAACAAGCTTATACCCATGTCATCTTCAAGAATGCCACATTTACATTTACATGGGCATTCCAGAGGACCAATCAGGGTCAAGAT
Seq A exon
GTAAGTTCCAAGCACTTAAAAAAAAAGAGCAAAGATGATACTCCTTGTGGAGATTTATACAAAGTGTTGACTGAAATCTACTGGAGGAAAAAACTTAGCTTTTTACTGATGTGAAATCAATCATTTTGTTATGAGTAGACTGGTATAAAATGATATATATATATACACACACATATTTATTTGTGTTTTGAGAGCAAGACTATGAAAAGGAATGACAACGCATCTTAGAATTATTCCACACTTTGAATAAACATAGCTGTTAAAAGTTTAAGCAGAAGAAAATCTTACTTTGTAGTTATTTAAAAACTTACTTGTAAAGCTTTCTGAGCCTTTGGGAAGGCTGGTAACTTTCTTCCTCTTTGTCTGAATGATCTGTCATTTGCTTAGATGCCATTTCTTGGTGTTGGTTTGTTACTTCAAGGTCACGATTGTCACCTTCTGTGGCTTGAAGACTGTATGTGTACATGTTGTTGGGTTAAAACACAGAACTATTCTCTTTTACTTTCTGCTAGAATAGAATAGACCTTAATCCTCTCGTAAGAATTTTCCATCATATGCTTCAAGTACATGTTATTGTGTAGATCTCCATCATAACGACCTTCCGAGGGTGCGAATAAGGTAAATCACTGTTTAAGCTCTGCCTTAACACTATGGTGGCAGATGGAGAGCATTTTCTCTTTTCTCTTCAGACTTTCATTGAGGAACCTGTTCCTCAGGTTTCACTTGACTCCAGCTGTGTTTTATGAGAGTTCAGAGTCCCAGCCTGTGGGGTGTGAACGTGCTATAGAAGACTTCCTGGCCTCCCTTTTGTCTTTAGCTCAGACAAAAAGCATTTAAGAAGCTGCTCTCTACTGATACAGTGGTGCTCACTGCTTGATGAAAACTAGGCCTTAATTGACTCAGTGTCACAAGAAGGAAAAGTATTAGTAAGATCCAGGTTTTTACTCTCTGTTGTGCATCCAGTAGAAGTCAGAGCGTGTTGGTTAAGGAAAGTGCTAAAGAGGGAGAGGAGACCCAAAGAACTGATGCAATTGCATCAATGTCACACAGTTAGTGTTTAAGTAAGGACTTTTTAATCCCTGGTCCAAGTCTTTTTCAACTTACCACACTGTAAACATCATTATAAACATGTTTATCATGATATTTAGACTAGATCAGAATAAACAGTGATGGGAGATACAGTTGCTCTTTTTGCTAAATCATATTGGTTCTTCCAAGTCTATACATATGCCTGAATTTTTACCAGTTATGATATAATCTCATGGTGATTGTGGCAAAATTCCTGGAACTCTATAACCATGAAAATTAGCTTCTAGTGTTAAGTCTTAGGTGCTTCCCTGGTGGCTCAGAGGTTAAGGCATCTGCCTGCAATGAGACCTGGGTTGCTGCTGCTGCTGCTAAGTCGCGTCAGTCATGTCTGACTCTGTGTGACCCCATAGATGGCAGCCCACTAGGCCCCGCCGTCCCTGGGGTTTTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAACTGGGTTAAGTCTTAATAATTTTAAAAAAGAAAAGTACCAAAAAGGAGTACTCTTAATCTACTGTCAGTTATAAACTGCTAGGTTGGAATACTTTGCTTAGTTATTTTGGTGATATGAACATAAAACAATCTGGTTGTACAACTGAGTGCCAAGGCAGAAGTCATTACTTTCTGCTCTCTTTTTAGAATAGACGGTTCATCAATGACATGGTGAAGATTTATTCTATCACTGCCACTAATGCAGTTGATGGGGTGGCGTCCTCATGCCGTGCCTGTGCCCTTGGTTCTGAACAGTCGGGCTCATCGTGTGTCCCCTGCCCCCCAG
Seq C2 exon
GCCACTACATTGAGAAAGAAACCAACCAGTGCATGGAGTGTCCACCTGATACCTACCTGTCCATACATCAGGTCTATGGCAAGGAGGCTTGTATTCCATGTGGGCCTGGGAGTAGAAGCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004023:ENSBTAT00000005255:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAAGTACGAATGTGGTGGAGT
R:
CTGAGTGCTTCTACTCCCAGG
Band lengths:
254-2118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]