GgaINT1016103 @ galGal4
Intron Retention
Gene
ENSGALG00000026986 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr26:1132962-1133587:+
Coord C1 exon
chr26:1132962-1133087
Coord A exon
chr26:1133088-1133413
Coord C2 exon
chr26:1133414-1133587
Length
326 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CAGTCCCCCACCCCGGGCAGGTC
3' ss Score
5.85
Exon sequences
Seq C1 exon
GGGCACGCCCTGGACCACAGCACTGGTGCCTGCCAGCCCTGTCCCCCCGGCACCTTCCTGCGGGGCCACCCACCTGACGGCCCCCCCGCCTGCCAGCCCTGCGGCCCCGGCACCCGCAGCAACCAG
Seq A exon
GTGAGCATCGCCACGTGTCCCCACATGCCTGGGGGTAGGGGGTGTCGGACTCCCCCCTGGGGACCCCTGGTGGGTGGCACTCTGGGGAGCTGGGGGGGGGCACAGCACCTGGCTGTCCCCAGTGGGTGGCACCAACTCTGCTGGGAGATCCCAACCTCTGACATCCCACGTGGGTGGCACCATCTTCTGATGGGTGACATCTGTCCCTGACCGTCCTCCATGGGCGACACCCTCCAGCCCTCTGCACCTCCCTGTGGGTGACAGCACCCTGGCTGGGTGGCACGATGGGACCCCATTGGGTGACAGCAGTCCCCCACCCCGGGCAG
Seq C2 exon
GTCCGCTCCCTCTGCTACAGTGACTGCACTTTCTCCCTGGCACTGCCCGGCCAAACGCTGCACTACGACTTCTCAGCACTGTCTGCCAGCACCGCCTTCACCAGCGGCCCCAGCTTCACCTCCAAGGGCCTCAAATACTTCCACCACTTCAACATCAGCCTCTGCGGCAACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026986:ENSGALT00000043678:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(80.4=97.6)
A:
NA
C2:
PF076998=GCC2_GCC3=PD(15.7=13.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGACCACAGCACT
R:
CGCAGAGGCTGATGTTGAAGT
Band lengths:
286-612
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]