HsaINT0086683 @ hg19
Intron Retention
Gene
ENSG00000116299 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:29618]
Coordinates
chr1:109735233-109737216:+
Coord C1 exon
chr1:109735233-109735496
Coord A exon
chr1:109735497-109737042
Coord C2 exon
chr1:109737043-109737216
Length
1546 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CCCGTCCCTCTCCCCCTCAGATC
3' ss Score
12.4
Exon sequences
Seq C1 exon
AGCAGGAAGTACACCAATGACGTTGCCAAGATCTACTCCATCAATGTCACCAATGTTATGAATGGTGTGGCCTCCTACTGCCGTCCCTGTGCCCTAGAAGCCTCTGATGTGGGCTCCTCCTGCACCTCTTGTCCTGCTGGTTACTATATTGACCGAGATTCAGGAACCTGCCACTCCTGCCCCACTAACACAATTCTGAAAGCCCACCAGCCTTATGGTGTCCAGGCCTGTGTGCCCTGTGGTCCAGGGACCAAGAACAACAAG
Seq A exon
GTACCTGTAGTCTGGCATGCATCCTAAACCTGACCCTCTGCTTGGATGACCTCAGAAGATGCTGGGTCCTGGGTAGGGTTCTTGAGAGGCTGATACCCGAGTGCTCCCCCTAGCATACTCCTAGGTTGGAGTCCTGGAGGACACCCATCCAGGCTGTGACTGTGGAGGGTTAGCAGGGCTTAATTTCCAGGGTCCAGGACTCAGTCACTGACAAGTCTCCTCTTTAGTTGGCAGGTAAGAGAGGTTGGTGACTGTCTGGTCCAGAGGGTTATTTGGCATCTGTGCAGAGACCTAAAGGGAAGGAACAGTGGGGTGAGGCCTGTGGCTTATATTCAAAAATGTTCAATCCAGCCTGTTATTATGGAAATCTGCCCCTTCTTTGGAAAGATAGAAACCCAACCATTGCTGGGACATATGATAACTGGCATTGCTGTCTTCTATCCCAGTGGCTTCTCAGCTTTACAAGTATAAGGATTCCTTTCCTAAGTGGAAAAAAGCTGGGTGCAGTGGCTCACATCTGTAATCCCAACACTTTAGGGGGCTGAGGTGGGAAGATCACTTGAGCCCCGGGGTTCAAGGTTGTAATGAGCCGTGATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACCCTGTCTCTAATTAAAAAAATAAATAAAAATAAAGGCACATTAAAAAACTAATAAATAAATAAAGTGGATAAGCAGTGTTGTTGCCCCCATGTACTTTCTGCATCTGAGAAGTACTTATGACTAAAAGCTTTTAGATATTAATCGATGCTTTTAAATGAATTTGCATTTTACTGATCACAACTACATGCACATACATCTGTAAAGCACTATCAATATGTACTCTGCAAACGTTGCCTAGTTCATCTGTGCAATAAGTGCAGCGATTCTACAGACTCCTGGCAACCTCTTTCGGGTACCCTGGACTTTTGCCACAACCTTCCTTCCCTGGAGCTCCCTCTGCTGCTGTGGGAGGGAATGACAGTTGTGTGCGGCTACCGCTGAATGGTGACCCTAAAACAGAGCAATGAATGGGTTTATGGGAAGAAAAGCCCCTTTCGGAGTTCAGTTTCCTACAGAGAACCTGAGAAACAGGAAGCAGAGTTCAGTGAGTTTTGCACTGTGAGGGGGTGAGGAGGGAGCAAGAAAAGTTTCTCTTCTCCCATCTCAGATACCCTTTTCTGGTTAGTGCCTCATTGTCTTCTGCTGGAAAGTAAAAAGGATCCTCTTGTGTCTTGAGAGGCTTCTATAATCTAGGCACAGGGTTATAAGGCTATAGAATTTGTCCAAACTCCCTTCTGAACAATAACAGATTTAGGTTTGTCCATCATATATGTGCTAATAATTGAATGGCAAATGTACATAAATCCCACTAGTGCCTGTTTCACTTCTTTTACTAGCCACTCCTAATCCTTTCTTCCTCCTCTTGACCCCATTTGGGCGGGACCAGACGGGGGAGAAAACTGCTACTCTTGGCTGCAGGCCCTCAAGGCCCTTCCTGACCAGCTGGCCCGACCCGTCCCTCTCCCCCTCAG
Seq C2 exon
ATCCACTCTCTGTGCTACAACGATTGCACCTTCTCACGCAACACTCCGACCAGGACTTTCAACTACAACTTCTCCGCTTTGGCAAACACTGTCACTCTTGCTGGAGGGCCAAGCTTCACTTCCAAAGGGCTGAAATACTTCCATCACTTTACCCTCAGTCTCTGTGGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116299-KIAA1324:NM_020775:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=44.3),PF076998=GCC2_GCC3=PU(80.4=46.6)
A:
NA
C2:
PF076998=GCC2_GCC3=PD(15.7=13.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAATGACGTTGCCAAGA
R:
TGTTTGCCAAAGCGGAGAAGT
Band lengths:
342-1888
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)