GgaINT0113147 @ galGal3
Intron Retention
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8105249-8106549:+
Coord C1 exon
chr1:8105249-8105512
Coord A exon
chr1:8105513-8106375
Coord C2 exon
chr1:8106376-8106549
Length
863 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
ATTCCTCTCCATCTCTGAAGGAC
3' ss Score
8.16
Exon sequences
Seq C1 exon
AGCAGGCAGTTCATCAATGATGTGGCAAAGATCTACTCCATCACAGTGACTAACGCGGTGGATGGAGTCGCCTCCTCTTGCCGGGCCTGCGCTCTGGGCTCTGAGCAGTCCGGCTCATCCTGTGTGCCCTGCCCAGTGGGACACTACATTGAGAAGGAGACCAGCCAGTGCAAGGAGTGTCCAGCCAACACCTTCCTGTCCATCCACCAGGTCTATGGCAAGGAGGCCTGCATTCCATGTGGGCCTGGCAGCAAGAGCACCAAG
Seq A exon
GTATGGAAGCTGTGATTGTCTCAGTGAAGGGCAGACTGGGTAGGTTGGAACATAGGGCCAGCTTGGCTGCTTTTACTGCAGGCATATGCCTTGTTAGCATGGGAGTATTATTGTAACCAATGAACCCATTCTTCCAGTTATGTCCTTAGTCTAATTTTTGTTTCTACACATATGATAAGATGATAAAATTGACCACACTGGCTCAAAAAATGGTCAATTTCAAGAAGCTACATTGGGATAGTGTATGAATAAAGTAAACATTTAAGTTACTTGAACCTCAAACTGTCCCAAACTCCTGCTATTTTAAACTCAGGGACTTCACCAGCTGGATGATGTTACCTTCCCTTCAGAACTTGCCTATAAGCCTAGATAAATGTTTACCATGTGAGTATTGTTCAGCAAGGAACTGCACGGGGACTTGAAGAACAGATCCGTTTTGTTCATATTCTTCCTGTCTTCAGTTGGGTCCATATTCTGTTACTGTTTCTTAAGCTCTGTTTCTTGGTTTTGCAAGATGCATGTGTAAGCAAGACCATGGTCTATCTACAGGGTTTTAAGCTTGGACATCGAGCTCATAAATATGCCCACAACAAAACAAAGCAGATCTACATTTTCTTGGATAGCAGAAAGGCAATGCTTAGGAACATCAAAGCCCTTCTGAGATTTGGTTGCGAGGAACTGAAGCAAGGATGGGAATTTTCTCAGGGGAAAGATGAATCACAGAAACAGGAAAAATTCCCCTTTGTCCTCAGCAAGGAAAGTAGTCCTGTCTGCTCCTCCTTGCTTTAACTCACAGTTGCCAGCTATATCGTTTGCTGCTGGTCCGTAATTTCTCTTTTATGAATTCCTCTCCATCTCTGAAG
Seq C2 exon
GACCACTCCGCCTGCTTCAGTGACTGCTTGGTGTCATACATCAAGGATAACCAGACCCTGAGTTATGATTTTAGCAACCTCAGCCAGGTGGGCTCCTTAATGAGTGGGCCGAGCTTCACTTCCCGTGGGACCAAGTTCTTCCACTTCTTTAACATCAGCCTGTGTGGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606:ENSGALT00000010664:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(80.4=46.6)
A:
NA
C2:
PF076998=GCC2_GCC3=PD(15.7=13.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCACAGTGACTAACGCGG
R:
TGAAGCTCGGCCCACTCATTA
Band lengths:
345-1208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]