HsaINT0086704 @ hg38
Intron Retention
Gene
ENSG00000164659 | KIAA1324L
Description
KIAA1324 like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr7:86912072-86913204:-
Coord C1 exon
chr7:86912941-86913204
Coord A exon
chr7:86912246-86912940
Coord C2 exon
chr7:86912072-86912245
Length
695 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTCTTTATCTTTAATCAAAGGAC
3' ss Score
5.22
Exon sequences
Seq C1 exon
AATAGACGGTTCATCAATGACATGGTGAAGATTTATTCTATCACAGCCACTAATGCAGTTGATGGGGTGGCGTCCTCATGCCGTGCCTGTGCCCTCGGTTCTGAACAGTCGGGTTCATCGTGTGTCCCCTGCCCTCCAGGCCACTACATTGAGAAAGAAACCAACCAGTGCAAGGAATGTCCACCTGACACCTACCTGTCCATACATCAGGTCTATGGCAAAGAGGCTTGTATTCCATGCGGGCCTGGGAGTAAAAACAATCAG
Seq A exon
GTAAGTGGGTCTGCATTTCAGGTATCCCCATGAAAGCACATTTTAATAGAGAAATTCAAGCGTTCTCCTTAATGTTTCTCTGGGAGCTATGAGGTTGCTATTTATTCTGAAATAAGACTTTCTACTTACCATTTCTGTTTTCTCCCTTCTTGCGTTTATTAAACACTTACTGTATGCTATGAAAGTACTAGTTACTGGTGACATAAAATATTAAAAGCTCCCAAATAAGAATGCTTTTCCAAAATATTAAAACTGATTTCTTGTGTATTGTTTAGGTACAGCAAATAAACTACCTATCTATAGGCTGGCTATAGCAGTCATCTGGGAACAGCTAGTGTTTCTTATAATTTTGAATGGCAAAGATTGATGCCATATTATGAGTGAAGGACAAAGCACTTTTACTGTCTGTTTAAATTTACGTAACAGAATTTTGGCTATTTCTTAAAATACCTTTCTACAAGGAACAAACTTGAGGATAACTTTACTCTGTCTTTAAAAGATTCTGAATTTTCTGAACTTTGTTTAGAAAAATCTAGTTAGAGTTTAGAAATTCTTTATATTAGTATGGTAAAGTATATTATAGCTAAGACTAAATTACTGGAATAGTTTTTATACCTAGAACTTTTTTCAAACACATTTTAGTAGCAGCTAATATTTTCTTTCCTGCTATATTGTTTCTTTATCTTTAATCAAAG
Seq C2 exon
GACCATTCGGTTTGCTATAGTGACTGCTTTTTCTACCATGAAAAAGAAAATCAGAGTTTGCACTATGACTTTAGCAACCTCAGCAGTGTGGGCTCATTAATGAATGGCCCCAGCTTCACCTCCAAAGGAACAAAATACTTCCATTTCTTCAATATCAGTTTATGTGGGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164659:ENST00000450689:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(80.4=46.6)
A:
NA
C2:
PF076998=GCC2_GCC3=PD(15.7=13.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGCAGTTGATGGGGTGGC
R:
TTCCTTTGGAGGTGAAGCTGG
Band lengths:
344-1039
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development