HsaINT0086704 @ hg19
Intron Retention
Gene
ENSG00000164659 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:21945]
Coordinates
chr7:86541388-86542520:-
Coord C1 exon
chr7:86542257-86542520
Coord A exon
chr7:86541562-86542256
Coord C2 exon
chr7:86541388-86541561
Length
695 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTCTTTATCTTTAATCAAAGGAC
3' ss Score
5.22
Exon sequences
Seq C1 exon
AATAGACGGTTCATCAATGACATGGTGAAGATTTATTCTATCACAGCCACTAATGCAGTTGATGGGGTGGCGTCCTCATGCCGTGCCTGTGCCCTCGGTTCTGAACAGTCGGGTTCATCGTGTGTCCCCTGCCCTCCAGGCCACTACATTGAGAAAGAAACCAACCAGTGCAAGGAATGTCCACCTGACACCTACCTGTCCATACATCAGGTCTATGGCAAAGAGGCTTGTATTCCATGCGGGCCTGGGAGTAAAAACAATCAG
Seq A exon
GTAAGTGGGTCTGCATTTCAGGTATCCCCATGAAAGCACATTTTAATAGAGAAATTCAAGCGTTCTCCTTAATGTTTCTCTGGGAGCTATGAGGTTGCTATTTATTCTGAAATAAGACTTTCTACTTACCATTTCTGTTTTCTCCCTTCTTGCGTTTATTAAACACTTACTGTATGCTATGAAAGTACTAGTTACTGGTGACATAAAATATTAAAAGCTCCCAAATAAGAATGCTTTTCCAAAATATTAAAACTGATTTCTTGTGTATTGTTTAGGTACAGCAAATAAACTACCTATCTATAGGCTGGCTATAGCAGTCATCTGGGAACAGCTAGTGTTTCTTATAATTTTGAATGGCAAAGATTGATGCCATATTATGAGTGAAGGACAAAGCACTTTTACTGTCTGTTTAAATTTACGTAACAGAATTTTGGCTATTTCTTAAAATACCTTTCTACAAGGAACAAACTTGAGGATAACTTTACTCTGTCTTTAAAAGATTCTGAATTTTCTGAACTTTGTTTAGAAAAATCTAGTTAGAGTTTAGAAATTCTTTATATTAGTATGGTAAAGTATATTATAGCTAAGACTAAATTACTGGAATAGTTTTTATACCTAGAACTTTTTTCAAACACATTTTAGTAGCAGCTAATATTTTCTTTCCTGCTATATTGTTTCTTTATCTTTAATCAAAG
Seq C2 exon
GACCATTCGGTTTGCTATAGTGACTGCTTTTTCTACCATGAAAAAGAAAATCAGAGTTTGCACTATGACTTTAGCAACCTCAGCAGTGTGGGCTCATTAATGAATGGCCCCAGCTTCACCTCCAAAGGAACAAAATACTTCCATTTCTTCAATATCAGTTTATGTGGGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164659-KIAA1324L:NM_001142749:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(80.4=46.6)
A:
NA
C2:
PF076998=GCC2_GCC3=PD(15.7=13.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGCAGTTGATGGGGTGGC
R:
TTCCTTTGGAGGTGAAGCTGG
Band lengths:
344-1039
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)