BtaINT0081112 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004023 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr4:33725859-33726851:+
Coord C1 exon
chr4:33725859-33725983
Coord A exon
chr4:33725984-33726751
Coord C2 exon
chr4:33726752-33726851
Length
768 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AGTTTGCATTATGACTTCAGCAA
3' ss Score
0.76
Exon sequences
Seq C1 exon
GCCACTACATTGAGAAAGAAACCAACCAGTGCATGGAGTGTCCACCTGATACCTACCTGTCCATACATCAGGTCTATGGCAAGGAGGCTTGTATTCCATGTGGGCCTGGGAGTAGAAGCACTCAG
Seq A exon
GTAAGTGGGTCTGTATTTCAATTATCCCCAGGAAAGCATATTTTAATAGACAAACTCAAAGGTTTCTCTTAATGTTTCTAATTTATATTTATAAATGGCTTTTTGAATTCCCTTCCTTATTTTACCTTGCCTTGCATCTATTGAGTGCTTAACATGGGTCTTGAAAATGATAATTACTGGGGACATAGAATATTAAGAAGAACATCTAAATAAGAATACCTTCCCAAAATATTAAAAGTGATTTCTTGTATATTCCATTATGACAGAACAAGTAAGCTGCCTCTCTATAGGTAGGCTGTAGGTATATATGGAGAACAGCAAGAGTATCTTGTAACATTTTAAAGGAAAAGATTGATGCTATGAGTGAAGTAAAAATAGTTTGATGTCTATTTGAACTGGCATGACAGGGCATTTTGGCTATTGATTAAAAATACCTTTCCACAAGAAACTAATCTTAGAATAACTTCACTCTTTAAAAAATTCTAACTCTTCTGAACTTTGCTTAGAGAAATCTAGAGTTTAGAAATTTTCTATATTAGAGTGGTAAAATATGCCATGACTAAGACAAAACTACTGAAATAGTTTTTAAACCTAGAACTTTTAGGAAACACTTTTTTTTTCATAGCAGCTAATGCTTTCTTTCCTGCCATATTGTTTTTGCTTTGTTTTGGATTCTTAATGTTTGTGGTCAAAGGACCACTCTGTGTGCTACAGTGACTGCTTTTTCTACCATGAAAAAGAAAATCAAAGTTTGCATTATGACTTCAG
Seq C2 exon
CAACCTCAGCAGTGTGGGCTCCTTAATGAATGGTCCCAGCTTTACCTCCAAAGGAACAAAGTACTTCCATTTCTTCAATATCAGTTTATGTGGGCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004023:ENSBTAT00000005255:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTACATTGAGAAAGAAACCA
R:
CTCGTGCCCACATAAACTGAT
Band lengths:
225-993
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]