GgaINT1016114 @ galGal4
Intron Retention
Gene
ENSGALG00000026986 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr26:1131199-1131521:+
Coord C1 exon
chr26:1131199-1131304
Coord A exon
chr26:1131305-1131371
Coord C2 exon
chr26:1131372-1131521
Length
67 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GAGCGCCGTCCCGCTGCCAGGGG
3' ss Score
5.38
Exon sequences
Seq C1 exon
GTGGAGCTGAGCCGTGGTAACAACGTGCTCTACTGGAGGACCACAGCATTCTCCGTCTGGTCCAAGGTCCCCAAGCCCGTGCTGGTGCGGAACATCGGGATCACAG
Seq A exon
GTAGGTGGGTGGGCGCAGGGTTGGGGTCCCCACGGCCCCCCGCCCCTGAGCGCCGTCCCGCTGCCAG
Seq C2 exon
GGGTCGCCTACACCTCCGAGTGCTTCCCCTGCAAACCCGGCACCTTCGCCGCCGCCGCCGGCTCCTCCTCCTGCCAGCTGTGCCCCGCCAACAGCTTCTCCAGCAAAGGGGCCACCGCCTGCCAGCCCTGCGAGCCCACCGCCTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026986:ENSGALT00000043678:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(1.7=2.8)
A:
NA
C2:
PF076998=GCC2_GCC3=FE(84.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCATTCTCCGTCTGGTC
R:
GGCCCCTTTGCTGGAGAAG
Band lengths:
178-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]