BtaINT0081102 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001136 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr3:34343650-34344036:-
Coord C1 exon
chr3:34343931-34344036
Coord A exon
chr3:34343800-34343930
Coord C2 exon
chr3:34343650-34343799
Length
131 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
GTGTGGTTCGTCCTCCCCAGGGG
3' ss Score
9.72
Exon sequences
Seq C1 exon
GTCGAGCTAAATCGAGGCAATAACGTTCTCTACTGGAGAACCACAGCCTTCTCAGTGTGGTCCAAAGTCTCCAAGCCCGTGCTGGTGAGAAACATTGCCATAACAG
Seq A exon
GTATGGATTGTAGACAGTGGGGTTGGGTCTGGGGTCTGATGCTGACTTCTGCAGGGAGGGTGGGGTTAGTCCCCACAGCCCTCAGTCTCCAGGCTCAATCCTTGCCTTTCTGTGTGGTTCGTCCTCCCCAG
Seq C2 exon
GGGTGGCCTACACTTCAGAATGCTTCCCCTGCAAACCTGGCACGTACGCAGACCAGCAGGGCTCCTCTTCCTGCAAACTATGCCCAGCCAACTTTTATTCCAATAAGGGAGAAACTTCCTGTCACCAGTGTGACCCTGACAAATATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001136:ENSBTAT00000001511:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(0.1=0.0)
A:
NA
C2:
PF076998=GCC2_GCC3=WD(100=86.3),PF075629=NCD3G=WD(100=56.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCTAAATCGAGGCAATAACG
R:
TTTGTCAGGGTCACACTGGTG
Band lengths:
247-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]