GgaINT0113139 @ galGal3
Intron Retention
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8090882-8091797:+
Coord C1 exon
chr1:8090882-8090987
Coord A exon
chr1:8090988-8091644
Coord C2 exon
chr1:8091645-8091797
Length
657 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ACCTGCAAATTACCTTACAGGAG
3' ss Score
7.66
Exon sequences
Seq C1 exon
GTAACCTTGAAATCAGGTAGTAATATACTATACTGGAGAACAACAGGGATTCTTATGGGGTCCAAAGTGGTAAAACCAGTTCTGGTGAAAAACATCACAATTGAAG
Seq A exon
GTAAGAGATATTTGCCTTTTAGGTATTATCTCACTCTTCTATCATGGTGCTTGACAAGTGCTATTTCTACTGGTGTGCCCTCAACACTGAAGTGGCTTTTTTAGCCCCCTTATCCCCTTCCTCTTATTTTAATGTGCAGAAACAGAACATCAAAACTTCACTGTCAGGGAAAAGGCTGAAGAATGAATTTAGCTGGTACATGAGGCCATCTACTGGAGAAGACTAGCTTGGCAAGCAGATAGGAAAGGAGCAAGGAGGTTTTCTATAAAAAAGAGAGGAAAGAAGCAAAGAGATTTTCTGTTACACAAAAGACCATGCTTATTGGTGAGCCTCTCAAGAGTGAAAAATAGGCTCACACTTTTATCATAACAATGGTAGTTAAATTACTGCTTAAATGATCCATTTAATCTGGAATTGCTCTTTGATGTCTTTCTCTAAGGTTAATCAAACTTGGAGTACTTCATAAGATTCTTACAGGGGTCAAGACTTGCACTGAAGACAGAATGATCAAGATTCAGCACAACCAAAGTTTTTAGAGTGCTTAAAGCCTGTGATTTTTAATCTGTGCAATGGCTTGTTTTCCCAGATACACTGCTTAGTAGTTGGTAGAGCATACCTCTCTGTATTTTATTGTTTTACCTGCAAATTACCTTACAG
Seq C2 exon
GAGTTGCATATACATCTGAATGCTTCCCATGCAAGCCTGGTACTTACAGCGACAAACCAGGTTCATCTGGCTGCCAAGAATGTCCAAGAAATACTTACTCTGAGAAGGGAGCTAAAGAGTGCACCAAGTGTAAAGAAGAAATCTATTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606:ENSGALT00000010664:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(0.1=0.0)
A:
NA
C2:
PF076998=GCC2_GCC3=WD(100=63.5),PF075629=NCD3G=WD(100=55.8),PF076998=GCC2_GCC3=PU(53.8=40.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATACTATACTGGAGAACAACAGGG
R:
ATAGATTTCTTCTTTACACTTGGTGC
Band lengths:
230-887
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]