HsaINT0086716 @ hg38
Intron Retention
Gene
ENSG00000164659 | KIAA1324L
Description
KIAA1324 like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr7:86938808-86940115:-
Coord C1 exon
chr7:86940010-86940115
Coord A exon
chr7:86938961-86940009
Coord C2 exon
chr7:86938808-86938960
Length
1049 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TGTTTTTCATTACTGCACAGGGG
3' ss Score
7.17
Exon sequences
Seq C1 exon
GTAATGCTGAAATCAGGCACAAACATACTCTACTGGAGAACTACAGGCATCCTTATGGGTTCTAAGGCGGTCAAGCCTGTGCTGGTAAAAAATATCACAATTGAAG
Seq A exon
GTATTTCATGGCATTCTGTTTTAGTAGTCACCAGTCACATCTTACAGTTAGTTAAAATATTTATTAAAGTTTTGGTTTGGCTGGCTCAAAGATTTATAGAACAGAAATTAATATGTTAGGGAATCATATAGGTCTGGAGACCCTGGTTTTACTCCCAAGAAATCGACAGTTGTTTTCTTTTTTTCTTGTACCCTTGAACTAAATTATTTAATCATTGCAAAAAAAGTAAACATGATGACAATTTTAGATGTCTGTAAACAAAAACAAAATGTCTCTGTGTTAATAAGACCCCATTATTCCTCCAAGAAATGTCTGTTGTGCCAGACATTGGGCTTACCAGGGAACTGATGACCTAGTCACTGCTATATCCATAAAAATAACAATAAACATCTTGACCTGACTCTTTCCTAAACCTTTTATGCTTCTCTGAGCCAACCGGGTAATTTCTGGCCCAGGAGAGCAGTCGGTGAACCCTGGCATGGTTCATTCTCAATTAGGAGTATTTTTCATTAAAGCAGTGATTCTCCTTTATTAAACTTTGGCTTACGTTTTAATATGTTCATTGTGGGCTTGTTCCTGTGAACAATGTGTTAACTCATTAGTCACTAGGACATCTGCTGGCAAAGACTGGAATTACAAACCAGAGGAGAAGTCAAGCCATTCCTAGGTCTTACCTGTGACTTAATAAGCAGTGGAAAAAAAAGGGAACAGGTTACCATAAGGATCAGATAATTATAGCCCTATAGAATTGGAGGGAACCTTAGGGTTTATCTCATTTTTGAGTTAGTGGAGTTGTCTTTTGACTGCTCAGTTAATACAAGTATTATACCTCTATGAAATCTTCATCTCTTATTTGTTTGCTGACTTGATTGTGCAGTTCCTTGTACACAATAAATGCTTTCTTAGTGCTGGATGAATAAGATAAAAGATTTGGGCTGACCTTACTGTTCATATATCTCCCTCACTTCTGGGTAGAAGCAGAAGTAGGTGCTGATTTGCTTATTGGTATTGGGTCCCCCTCCCATGCTCTGTTTTTCATTACTGCACAG
Seq C2 exon
GGGTGGCGTACACATCAGAATGTTTTCCTTGCAAGCCAGGCACATTCAGCAACAAACCAGGTTCATTCAACTGCCAGGTGTGTCCCAGAAACACCTATTCTGAGAAAGGAGCCAAAGAATGTATAAGGTGTAAAGACGACTCTCAATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164659:ENST00000450689:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(0.1=0.0)
A:
NA
C2:
PF076998=GCC2_GCC3=WD(100=63.5),PF075629=NCD3G=WD(100=55.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAAATCAGGCACAAACA
R:
TGAAAATTGAGAGTCGTCTTTACACC
Band lengths:
254-1303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development