BtaINT0081124 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004023 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr4:33687999-33696131:+
Coord C1 exon
chr4:33687999-33688104
Coord A exon
chr4:33688105-33695978
Coord C2 exon
chr4:33695979-33696131
Length
7874 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TGTCTCCCGTTACCACACAGGGG
3' ss Score
7.98
Exon sequences
Seq C1 exon
GTAATGTTGAAATCAGGCACAAACATACTGTACTGGAGAACTACAGGCATCCTTATGGGTTCCAAGGCAGTCAAGCCAGTGTTGGTAAAAAATATCACAATTGAAG
Seq A exon
GTATTTCACATCTGTCTCTTTTAGTAGTCGCCTATCCCATTTAAAATATTGACTACATTGTTGGTTTCGCTGGTTCAAGGGGATATGGGACAAAAATTAGCAGGTTAGACATCATATTGGCCTAGAGACTCTGGTTTTATTTCTGGCAAGTTGGCTGTTTGTTTTTCCAATCCCTAAACTGAATTATTTAATCTGTGTGAGAAAGTAAAAATAATGACAATTGTAGGTGTCTTGAAATAAAAGAAAACAATCTTTATTAATAGCCTACTCTTCATTCAAGAAGACTTCATTGTGCTGGCATAGTACTTATACAGGTCACGACTGTATCCATAAAAATAACAGTGAAATAAATATCTTGGCTTGTCTCCTACACCTTTTGCCTCTCTTAACCAACTGCATTTTCTGACTCCTGAGAGTAGACAGCATGTTCTGGCATGGTTCATTATCAGAGCTACTTTTACTTAAAGCAGTGATTTCTCTTTTATTTAACTTTGATTTACATTTTACTATGGTAAAAGTGTGCTTCTTCCTGTGAAGCTAACTCATTAGTTGTAGGGACATCTGCTGGTGATACCTGGACTTACAAACCTGAAGAAAAGTCAGCTTTTCCCTGGGTCTTATGGGTCTTGTCTGTATGTAACTAGTGAGCAGTGGAGAAAAAGGGAAATGGTAGACACAGAAAGAAGAGAATGGTACAGAATTGGAAGGAATCAGAATTTACAACATTTCTGATTAATGAAGTTGTTTTAATAGCTGAGCTTATACACTGATTCAGTTCAGGTCAGTCACTCAGTGATGTCGGACTCTTTGCGACCCCATGGACTGCAGCACGCCAGGCTACCATGTCCATACCAACTCGGAGCTTACTCAACTTTATGGCCATTGAGTTGGTGATGACATCCAACAATCTCATCCTCTGTCAACCCCTTCTCCTCCTGCCTTCAGTCTTTCTCAGCATCAGGGTCTTTTCCAGTGAGTCAGTTCATCCATCAGGTGGCCAAAGTACTGGAGCTTCAGCTTCAGCATTGGTCCTTCCAATGAATATTCAGGACTGATATCCTTGAGGATTGACTGCTTTGATCTCCTTACAGTCCAATGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCAGTGTTCAGCAAGTCTTTATAGTCCAACTCTCACATCCGTACATGATTACTGGAAAAAACATAGCATTGACTAGATGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTTAATATGCTGTCTAGGTTGGTCAGAACTTTTCTTCCAAGGAGCAAGCACCTTTTAATTTCATGGCTGCAGTCACCAACAGAGTGATTTTGGTGCCAAAGAAAATAAAGTCTGTCACTGTTTCCATCGTTTCCCCATCTATTTGCCAGGAAGTAATGGGACGGATACCATGATCTTCGTTTTCTGAATGTTAAATTTTAAGCCCACTTTTTCACTCTCCTCTTTCATCAAGAGGCTCTTTAGTTCTTCTTTGCTTTCTGCCATAAGGGTGGTGTCATCTGCATATTTGAGGTTACTGATATTTCTCCCAGCAATCTTGATTCCAGCTTGTGCTTCTTCCAGCCCAGCATTTTGCATGATGTACTCTGCATATAAGTTAAATGAGCAGGGTGACAATATACAGCCTTGACATATTCCTTTTCCTATTTGGAACCAGTCTGTTGCTTCATGTTTGGTTCTATTGCTTCTTGACCTGCATACAAAGTTCTCAGGAGGCAGGTCAGGTAGTCTGGTATTTGTTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTTGCTTTTTCTATGATCCAATGGATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAATCCAGCTTAAACATCTGGAAGTTCACGGTTCACATACTGTTGAGGCCTGGCATGGAGGATTTAGAGCATTACTTTGCTTGTGTGTGAGTGCAATTGTGTGGTAGTTTAAGTATTTTTTGGTGTTGCTTTTCTTTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGTCCACTGCTGAGTTTTCCAAATTTGCTGGCATATTGGGTGCAGCACTTTCACAGCATCATCTTTTAGGATTTGAAATAGCTCAACTGGAGTTCCATCACCTCCACAGCCAGCCTTCTTGATAGTGATGCTTCCTAAGGCCCATTTGACTTTGCATTTCAGGATGTCTGGCTCTAGGTGAGTGATCACACCGTCATGACTATCTGGATCATGAAGATCTTATTTGTATAGTTCTTCTGTGTATTCTTGCCACTTCTTCTTAATATCTTCTGCTTCTGTTGGGTCCATACCATTTCTGTCCTTTATTGTGCTCATGTTTGCATGATATGTTCCTATAATGTCTCTAATTTTCTTGAAGAGCTCTCTAGTCTTTTCCATTTTATTGTTTTCCTCTATTTCTTTGCCTTGATCACTGAGGAAGGCTTTCTTATCTCTCTTTGCTATTCTTTGGAACTCTGCATTCAAATGGGTATATCTTTCCTTTTCTCCTTTGCCTTTTGGTTCTCTTCTTTTCTCAGCTATTTCTGAGGCCTCCTCAGACAACCATTTTGGCTTTTTGCTTTTCTTTTTCTTAGGGATGGTCTTGATCACTGCCTCCTAAACAATGTCACGAACCTCTGTCCATAATTCTTTTGGCATTCTATCAGGTCTAATCCATTGATCTATTTGTCACTTCCACTGTATAATCATAAGAGATTTGATTTAGGTCATACCTGAATGGTCTGGTGGCTTTCCCTACTTTCTTAAAATATGAATTTGGCAATAAGGAGTTCATGATCTGAGCCATAGTCAGCTCCTGGTCTTGTTTTGCTGACAGTATAGAGCTACTCCTACAAGACTTACTAAGAACTAACACCCCAAAGAGATGTCCTTTTCGTTATAGGGGACTGGAATGCAAAAGTAGGGAGTCAAGAAATACTTGGAGTATCTGATAAATTTGGCCTTGGAGTACAGAATAAAGCAGGGCAAAGGCTAGTAGAGTTTGCCAAGAGAATGCACTGGTCACAGAAAACGCCCTCTTCAAATAACACAAGAGAAGACTCTACACATGGACAGCACCAGATGGCCAACACCGAAATCAGATTGATTATATACTTTGCAGCCAAAGATGTAGAAGTTTATACAGTCAGCAAAAACAAGACTGGGAGCTGACTGTGGCTCAGATCATGAACTCCTTAATGCCAAATTCAGACTTAAATTGAAGAAAGTAGGGAAAAACCACTAGACCATTTAGGATGACCTAAATCAAATCCCTTATGAGAAGTGAGAAATAGATTCAAGGGGTTAGATTTGATAGAGTGCCTGAAGAACTATGGACAGAGGTTTGTGACATTGTACAGGAGGCAGTGATCAAGACCATCCCCAAGAAAAAGGAATGCAAAAAAGCAAAGTGGTTGTCTGAGGAGGCCTTACAAATATCTGTGTAAGAAGAGAAATGAAAGGCAAAGAAGAAAAGGAAAGATATACCCATCTGAATGCAGAGTTGCAAAGAATAGCAAAGAGAGATAAGAAAGCCTTCCTCAGTGATCAATGCAAATAGAATGGGAAAGACTAGAGGTCTCTTCAAGAAAATTAGAGATACCAAGGGAACATTTTGTGCAAAGTTGGGCTCGATAAAGGACATAGATGTTATGGACCTAACAGAAGCAGAAGATACTAAGAAGAGGTGGCAAGAATACACAGAAGAACTGTATAAAAAAGATCTTCATAACCCAGATAACCACAGTGGTGTGATCACTCACCTAGAGCCAGACATCCTGAAATGCAAAGTCAAATGGGCCTTAGGAAGCATCACTACAAACAAAGCTAGTGGAGGTGATGGAACTCCAGTTGAGCTATTTCAAATTCTAAAATATGATGCTGTGAAAGTACTGCACTCAATATGCCAGCAAATTTGGAAAACTCAGCAGTGGCCATAGGACTGGAAAAGGTCAGTTTTAATTCCAATCCCAGAGAAAGGCAATGCCAAAGAATGCTCAAACCAGCACACAATTGCACTCATCTCACACACTAGTAAAGTATTGCTCAAAATCCTCCAAGCCCGGCTTCCACAGTATGTGAACCATGAACCTCCAGATGTTCAAGCTGGATTTAGCAAAGGCAGAAGAACCAGAGATCAAATTGTCAACCTTTGTTGGATCATTGAAAAAGTGAGCGAGTTCCAGAAAATCATCTACTTCTGCTTTCTTGACTATGCCAAAGCCTTTCACTATGTAAATCACAACAAACTGGAAAATTCCTCAAGAGATGGGAATACCAGACCACCTGACTTGCCTCTTGAGAAATCTGTATGCAGGTCAAGAAGCTACAGTTAGAACTGTACATGGAACAACATACTGTTTCCAGATCTGGAAAGGAGTATGTCAAGGCTGTATATTGTCACCCTGCTTATTTAACTTATATGCAGAGTATATCATGAGAAATGCTGTGCTGAATGAAGCAGAAGCTGGAATCAAGATTGCTGGGAGAAATACCAATAACCTCAGATATGCAGATGACACCACCCTTATGGCGGAAAGTGCAAAAGAACTGAAAGCCTCTTGATGAAAATGAAAGAGGAGAGTGAAAAAGTTGGCTTAAAACTCAACATTCAGAACACGAAGATCATGGCATCTGGCCCCATTGCTTCATGCAAACAGATGGGGAAACAATGGAAAAAGTGACAGACTTTATTTTCTTAGGCTCCAAAATCACTGCAGCCATGAAATTAAAAGACACTTGCTCCTTGGAAGAAAAGTTATATCCAATGTAGACATCATATTAAAAAGCAGAGACATTACTTTGCCAACAAATGTCCGTCTAGTCAAAGCTATGGTTTTTCCAGTGGTCATGTATGGATATGAGAGTTGGACTATAAAGTCAGCTGAGCGCCAAAGAATTGATGCTTTTGAGCTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCAAAGCAGTCAATCGTAAAGGAAATCAGTCCTGAATATTCATTGGAAGGACTGATGCTGAAGCTGAAGTTTCAGTACTTTGGCCACCTGATGTGAAGAACTGACTCACTGGTAAAGACCCTGTTGCTGAGAATGACTGAAGGCAGTAGGAGAACAGTTGACAGAGGATGAGATGGTTGAATGGCATCACTGACTCTGTGGACATGAATATGAGTAAGCGCCGAGTTGGTGATGGGCAAGGAAGCCTGGCGTGCTGCAGTCCATGGGGTCACAGAGTGTCAGACTCGATCAGTGACTGAACTGAACTGAACTGATAGAGCTTCTCCATCTTTGAATGCAAAGAATATAGTCAGTCTGATTTCGCTATTGACCATCTGGTAATGTCCATGTGTAGAGTCTTCTTTTGTGTTATTAAAATAGGGTGTTTCTATGCCAGTGCATTCTCTTGGCAAAACCCTGTTAGCCTTTGCTCTGCTTCATTCTATTCTCCAAGGCCAAATTTGCCTGTTACTCCAGGTATCTCTTTAATTCCTAGTTTTGCATTCCAGTCCCCTATAATGAAAAAGACATCTTTTTTGGGTGTTCTAGAAGGTCTTGTAGTTTTTCATAGAACTGTTCAACTTCAGCTTCTTCAGCATTAGTGGTTGGGACATAGACTTGGATTTTTGTGATATTGAATGGTTTGCCTTGGAAACGAACAGAGATCATTCTGTCATTTTTGAGATTGCACCCAAGTACTGTATTTCACACTCTTTTGTTGACTATGAGGGCTACTCCATTTCTTCTAAGGGATTCTTGCCGACAGTAGTAGATATAATGGTCATCTGGGTTAAATTCACCCATTCCAGTCCCTTTTAGTTCACTGATTCCTAAAATGTTGATATTGTCTCTTGCCATCTTCTGTTTGACCACTTCCAATTTACCTTCATTCATGGACCTAACATTCCAGATTCCTATGCAGTATTGTTTACAGCATCGGACTTCCATCACCAGTCACATCCACAATTGGGTTTTATTTTTGCTTTGACTCCATCTCTTCATTTTTCTGGAGTTATTTCTCCACTGTTCTCCAGTAGCATATTGGGCACATGCCGACCTGGGGAATTCATCTTTCAGTGCCCTATCTTTTTGCCTTTTCATACTGTTCATGGGGCTTTCAAGGCAAGAATACTGAAGTTGTTTGCCATTCCCTTCTCCAGTGGACCACGTTTTGTTAGTACTCTCCAACATGACCCGTGAGTCTTGGGTGGCCCTACATGGTGTGGCTCATGGTTTCATTGAATTAGACAAGGCTGTGGTTCCATGTGATCAATTTGATTAGTTTTTTGTGGTTGTGGTTTTCATTCTGTGTACCCTCTGAAGGATAAGGATACAGGGCTTATGGCAGCTTACTGATGGGAGAGACTAACTGAGGGGGAAACTGGGTCTTGTTCTGATGGGTGGGGCCATGCTCAGTAAATCTTTAATCCAATTTTCTGTTGATGGGTGGGGCTGTGTTGTCTCCCTGTTGTTTGACCTGAGGCCAAACTATGGTGGAGGTAATGAAGATAATGGGGGCCTCCTTCAGTAGGTCCCATGCATGTGCTGCTGCACTCAGTGCCCCCAACCCTGCACCAGGCCATCAGTGACCCATGCCTCCGCCGGAGACTGCTGGACACTCACGGGCAAGTCTGGGTCAGTCTCTTGTGGGATCACTGCTCCTTTCTCCTGGGTCCTGGTGTGCACAAGGTTTTGTTTGTTCCCTCCAAGAATCTGTTTTCGCAGACCTGTGTAAGCTCTGGTGCTTCTATGATGGCGTTAATGGTGACCTTCTCCAAGAGGGCTAATGCCATTCCCAGGTCTGCTGCACCCAGAACCCCTGCCCCTGAAGCAGGTCACTGCTGACCCATACCACCCATACCTCTGCAGGAGACACTCAAACACAGTTCTGGCTCAGTCTCTGTGGAGTCTCTGAGTCCTGGTGCACACATGGTTTTGTTTGTGCCCTCCAAGAGTCTGTTTCCCCAGTCCCGTGTAAGTTCCTGCAGCTCTGTGATGGGGTTAATGGTGACCTCCTCCAAGAAGGCTTATGCCATACCCAGGTCTGCTGCATCCAGAGCCTCTGCCTCTGTGGCAGGCCACTGCTGACTTGTACCTCCACAGGAGACACTCAAACACTCAAAGGCAGATCTCAAAGGCAGGTCTGGCTCAATCTCTTAGGACTTTTCTGGTGCACACAAGGTTTTGTTTGAGCCCTCTGAGCATCTCTGGTGGGTATGGGGTTTGGTTCTAAATGTGATTTCATCCCTCTTGCTGTCTTGCTGGGGCTTCTCCTTTGCCCTTGGGAGTGGGGTATATTTTTTTGGTGGGATCCAGCATTCTCCTGTTGACAGTTGCTCAGCAGTGAATTGTAATTTTGGAGTTCTCGCAGGAGAAGATGAGCGCACATCCTTCTACTCTGCCATCTTACTATGGAATCTCATACACTGATTATATACTTCTATCAAATCTGAATCTCTTAACTGTTCACTATACTTCATTGTTCAATTCAGTATTCATCCCAGCTCTCTACAAACAGTAAATACATTTGTGATGTTGAATTAATGGTATATAAAAGACCTGGGTTGAGCTTACTATTAATATTTCTTGTTCACTTCTGGTAGCAGAAGCAAGGACATGCTGATTTGTTGCTGTTGGGACCTCCCCCTATGCTCTGTCTCCTGTTTCCACACAGGGTGACACAGGGTCCTCCCTCCATGCTCTGTCTCCCATTACCACTTAGGGGTGATATAATGCCCTCCCTTCATGCTCTTTCTTCCATTACCACACAGGGGTGGTACAGGGCCCTCCCTCCATGCTGTGTCTCCCGTTACCACACAG
Seq C2 exon
GGGTGGCCTACACATCAGAATGCTTTCCATGCAAGCCCGGCACCTTTAGCGACAAACCAGGTTCGTTCATCTGCCAAGTGTGTCCCAGAAACACCTATTCTGAGAAGGGAGCCAAAGAATGCATCAGGTGTGATGAGGACTCGCAATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004023:ENSBTAT00000005255:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PU(0.1=0.0)
A:
NA
C2:
PF076998=GCC2_GCC3=WD(100=63.5),PF075629=NCD3G=WD(100=55.8),PF076998=GCC2_GCC3=PU(78.6=63.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]