GgaINT1017202 @ galGal4
Intron Retention
Gene
ENSGALG00000010258 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr5:37210588-37213889:-
Coord C1 exon
chr5:37213740-37213889
Coord A exon
chr5:37211463-37213739
Coord C2 exon
chr5:37210588-37211462
Length
2277 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CCCTCTTTTCCTCCTTGCAGACA
3' ss Score
13.35
Exon sequences
Seq C1 exon
GTCTTTACGAGGGCTTTGAAGGGCTGCAGGCTGAGGAGTGTGGCATTCTCAATGGCTGTGAGAACGGACGTTGCGTGCGCGTCCCAGAGGGCTACACCTGTGACTGCTTCGATGGCTACCAGCTGGACATGACCCTCATGGCCTGTGTGG
Seq A exon
GTAAGTGGCTCTTTGTCCCGCTACAGACACGGTGGCCCAGGCTTCCCTTATCTGCTGCCGCTCTCTGGTGGTGCTGCCTGGGACAGTTGTCAGAGGCTCCCCTGCTCTCCTGGGTGCTTTGTGGCCTTGGAGCTGGGAACGTGTCAGGGCACCTGGGGGCATCAGGGAACAGCTGGTCACTGCCTTCTTTGTGTAGCACTCCTGTGCATAGATGGATTTGTGCTTCTGTTTTCTTTCCTCTAAACTCACCGTGAATTTCCACCCTGTCCTATAAGCAAAGGTCTCTAAAGCTTCTCTCATCATCTGCTCTACATCTATCACTCTGTGTGTCCATGCTTTCAAAAGTGCAACTCCCCAGGCCAGCCCCAGGCACCCAACAGGACAGATGAAGATGTTCTTTCCTTAGGCAGGGCACTTACTCCACCCCCCAGCATCCTTTCTGCATGACACGATCATGCAACTTCTTCATGCAAAGCCAGTGGCCTCTCCTTCCCCAGAGCTGCTGGGCAGGACAGCTGCCTAGCCTCTTGCTCCCCCTTCTGTATTTGTGCACAATTTGCTTTTCCTCAGCCGCAATGCTTTGCACTTGTCTTCAGTGAATTTGACTTCTCCGAGGGATCAGAGCACTCGCAGCTTGGCATCACATAGGTCTTATGAGCATGAAGAGTATTCCTTTGTCCACACAGATGACAGCATTGACTGGAGCAGGGGTCAGGATCGACCCCACAGGCAACATTCTGAATGGCTTTCATTTTAACAGCCAAGTATTGCTAATTATCTCTAGGGTGCAGCTTAGTGACCCATTGTGCAATTGCTGCAGTTTCATCTAGCCCATATTTCCTCAGTCCACTTGAGTGTGTCATGTGAGAGCCTGTTGAAATCCTTATCCTGGCCAAGAGTTATACCCACTGTTCCCCCCTTATCGCACAGATTGCTTATCGGGTCAGTAAGGGGAAACAGATTGCTTGACATAATCAGGCTTGAACAGATCTGCTCCAGCTATTTAACAGCCCCTATATCCTTCTGGGGAAGGAGGGCAGTGACCTAATCATCCAGAAACCTGCTTTGTTTAAGTGGATGGGAGTGAGTGGTCTGTACTTCCAGATCCCCCTTCTCCATTTGTGGAGACACCGCGTTCCTCAGGGACCTCCTTGATCCTCCACCTCAGAGGAAACCCTGACTCCTCGGTGCTGGAGAACCACGTATTTGCAGATGAGCTGCAGCAGCTTTACTTAGCTAACTGTCAAGCCTCTCCACTGAGATGTGGAGCTCCCAGAGCTCCTGCCTCTCCTTTAAACACTTGAAACATCCATACTGAATCTGGTCAGAAGGAGCATTTTTACGACGGCTGGAACAAGGCCTGCATCAGCTACACCAGCCAGCTCGGCATTGTCTGGCTTTTGTTTCCTCCTCTGATAAGGCCCAGACTTACATTCCCCATTGTTTCCTGTTAATGTATTTATGGAGCCTATTCTTGTTGCTCTTTCTGTCTTTAGCCAGCCAGCGCTTGTTTCACACTGCCCAGGGAGCCCCAGGCCTTCGCGTGCACTGCTAACACAGCTCTGCTGCTGCTCACCCTTAGGTGCCCCTGACGAGGCTGGAGTCTGCAGTCGAGGGGCTCAGGCTCAGGCCTGCAGTCAGAGAGATGAGGCCCCACTGCTGCCTCTCCACAGGTTGGGGTGGTTCGGGGTTGCTGCATTTAGCAGAGCTGCAGCACAGGGCTGCCTGCAGGGCTCCCACATGAGCACTTTGGCACAGTTTGCAGCTTAATAAAACAAGCCCTTGTTTGCATAGCACGAGGTTCCTTTGTGTTCTGGTCTTGGAGGTGATAATCAGCCTTTCAGGGCTACCATCATCTGCCTCCTGACCTTGTCAGATTGGGAAAGGACATATTCTAAGGCTGGAGGTGGCCTTTCTCCCACATCTTTGGCTATCATGACTTGTCAGTGAGAAGCTGCTGTGCACCCCCGGGGTGTCACCAGCTGCAGAGCATGGGCAGGGCCTGTTCTGGGGTTCCAGCCTGTGGCCGGGGTTCCAAGCACTGGGGATGCCATACTTGGGGGGTTCTGCAGATGTGCTGAATGCAGCATCAAGGCAAAGGAATCAAGTGCAAACCAGCGTGACAGAGGCTGGGGCGTCACAGTGGGCAGCCTGGATGTGCTGGGGGACACAAGGAAGCTTGAGGAGCCTGGACAAGGGAGGGCTTGCCTGGGGAGCAGGGATATGGAGGGACTGTTCGCTGTGCCACCATCTCACCCCCTCTTTTCCTCCTTGCAG
Seq C2 exon
ACATCAATGAGTGCGAGGACGTGGATGTCCCAGTGCCCCTGTGCCAGGGCGGCACCTGCGAGAACACAGAAGGCTCCTACCGCTGCCGCTGCTTACCAGGCTATGTGGCACTGGCCCAGCCCCACCACTGCGTGCCCCAGACAGCCCAGAGCCCGGCAGCAGCATAGCTCTAGGGGAGTGGCAGTGGGGTACTCCCCTCTGGTGGCACGCTTCTCCGGGACCTGCTGGTGTGGAAAAGGGTCCCCGGGGCTGTGGCTGCTTCTAAGCCCTTCGTCCCTTCACCTCCAAAGCGCACAACTCCCCTGCCACCTTTTCCTGGCTGTGACTGCCAGGGCTGAGCTCCCAGCCTCTGTACCCCCATCCTCACCTCCAGCCCCTGCTTCTGCCACAGCAGAGCCCTCCCCAGCCCAGCCCCCAGCACCTGCCGCAGTGCCACATGCCACGGGGGCTCGCAGGACACTTTCTCCTGCCGCGCAGCCCCAGCTCCTCCCTGCACCCTGCAGAGAGACTGGGTTCACCTCCCCACGGCGAGCATCACTGCTGCACTGACCTAGCGGCGAGCCTCACCGCACCACGCAGCCTGCCCCAGGACACAGCCCTGGGGGAGCAACCCCAGCTCCCTAAAGCTGCTGCCCAACCTCAAGGTGTGGTGGAGAGGATGGGGGTCCCACAGCCGGCTCACCCTGCAGCCGTCCCAGGAGCGTCCCTACCCCTGTGCTGCGCCTTTGTGCCCCGCGCTGGCTGGGGGGAGTGGGCAGGGTTCCAGCTTAGTTTCTGTAAAGTTGGTGACTTTTTTTTAACCGAGTCTGCTGGAAACTTCTCTCATGTTGTTAAATAAAACATTTATTTTGGGCCCTGTGGCTCATGACACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258:ENSGALT00000016690:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=58.8),PF062476=Plasmod_Pvs28=PU(38.6=66.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF062476=Plasmod_Pvs28=PD(60.2=94.6),PF0764510=EGF_CA=WD(100=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]