GgaINT1017741 @ galGal4
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1026315-1026649:+
Coord C1 exon
chr21:1026315-1026443
Coord A exon
chr21:1026444-1026520
Coord C2 exon
chr21:1026521-1026649
Length
77 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
3' ss Seq
TGCCCCACTGTGCCCCACAGAGT
3' ss Score
7.52
Exon sequences
Seq C1 exon
GCTGCCAGCCGCAGCAGTACGGGGTGGGCTGCCTTCAGCCTTGCTCCTGCCTGAACGGAGGGCTGTGCAATGCCACCGATGGGTCCTGCAGCTGCGGGCTGGGATGGACTGGGAAATCCTGCGAGTTAG
Seq A exon
GTAAAGCTGCTCCACACGCACAGCCCAGCCTGCTCCGTGGCTCAGTGCCTGCTGAGCTGCCCCACTGTGCCCCACAG
Seq C2 exon
AGTGCCCAGCCGGGAGCTTTGGTGCTGACTGCCAGCTGCGCTGTGCCTGCAGGCACAATGCCACCTGCGACCCCACCACCGGCGCCTGCCGCTGCCCCCCGGGACGCTATGGGGCCCTGTGTGAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGCCTTGCTCCTGCC
R:
GGTCGCAGGTGGCATTGTG
Band lengths:
169-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]