HsaINT0101837 @ hg38
Intron Retention
Gene
ENSG00000162591 | MEGF6
Description
multiple EGF like domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr1:3494371-3494741:-
Coord C1 exon
chr1:3494613-3494741
Coord A exon
chr1:3494500-3494612
Coord C2 exon
chr1:3494371-3494499
Length
113 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CCACCCTGCCCTGTCCCCAGCCT
3' ss Score
7.99
Exon sequences
Seq C1 exon
GCTGCCCCCAGAACCGGTTTGGCGTGGGCTGCGAGCACACCTGCTCCTGCAGAAATGGGGGCCTGTGCCACGCCAGCAACGGCAGCTGCTCCTGTGGCCTGGGCTGGACGGGGCGGCACTGCGAGCTGG
Seq A exon
GTGAGTGTGCGGGGCCAGCGGGACCCCAGCATCCCCTCAGGGAGGTGCCCTGGGCTGCCATAGGGCTGGGCAAGGCTGGTGCCGAAGGACTGCCCACCCTGCCCTGTCCCCAG
Seq C2 exon
CCTGTCCCCCTGGGCGCTACGGAGCCGCCTGCCATCTGGAGTGCTCCTGCCACAACAACAGCACGTGTGAGCCTGCCACGGGCACCTGCCGCTGCGGCCCCGGCTTCTATGGCCAGGCCTGCGAGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162591:ENST00000294599:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=PU(66.7=68.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCCCAGAACCGGTTT
R:
GGCCATAGAAGCCGGGGC
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development