GgaINT0134978 @ galGal3
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:995681-996796:+
Coord C1 exon
chr21:995681-995803
Coord A exon
chr21:995804-996667
Coord C2 exon
chr21:996668-996796
Length
864 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
TAGCTCCTGTGTCCCTGCAGCCT
3' ss Score
9
Exon sequences
Seq C1 exon
CGTGCGCTGAGGGGCACGGGGACGGCTGCGGGCAGCGCTGCGCCTGCCTGAACGGGGGGGTCTGCGACCCACAGGGACAGTGCCAGTGCCCACCTGGGTGGAGTGGGAGCAGCTGTGAGAGCC
Seq A exon
GTGAGTGGGGGCGGTGGGATGTGGGGGTGTGGGAGCGGGGGCTGCTCAGCGCAGAAATGAACGTCTGGATTGCAGCAGCTGGAAGGCTCGGGGTGCTGTGGTCAGGGTGGGTACCGCGGTTTTGGGGTAAGTGATGTGCTTTTGGGGTGGGTGCTGTGGTTTTAAGGTCAAGATAACATTTCATGAGGGCTGAAAAGAGTTTGGCTTTGGGTTCCTGCTCTCACCCCCAAAGCTTCTCCCGGTCCCCACACACCCTCACCACTTTGCATGCACCAGCTCTGAGAGTTGCTCCAGTGACGCTGCTCTGTGCGTTCATTCACAGAGCAGACATGAAAGCTGAATTCCCAGATTTTTGCAGCTGTAGTGCTGACTTCTGGCTCCTGCTGGTACTGCAGATACTCAGTTTGCAGCTGCTTTAGGTACTTCTATGGCAACAGCAGCAAAGTGAAGAACTGGCAGCCATGTGTTCTGCCAGCACCCAGCTCTTGTTAAACAGTGCTTAGCCCAAAAACCCTTCCAGAAACCTTTGGTGCAGTTAAGATGGCTCTCTCACGCCAACTTGGGCACGAGTCTGTTTGCAGAAGGGCTCAGCCATGCAGTGAAAGGAACCCCATGTCCCTTTTTTATCGCCTAACTTGTCATTTCTCCCCTGCTTGCACCCCAAGCCTGTCCAGAGGGGCACTTTGGGGCGGGCTGCCAGGAGCGCTGTGACTGTGGGGACAAAGGGCTGTGCAACCCCATCACCGGCACCTGCCAGTGCCCCCCTGGATGGAGGGGCCGGCGCTGCGAGAAAGGTGAGATTGCACCGCGGTTTTGGCTGCTGCAGGTTGGGGACAGCCTGCCATAGCTCCTGTGTCCCTGCAG
Seq C2 exon
CCTGCCTGCCCGGAGCGTTTGGGAAGAGCTGTGCTGAACGCTGTGCCTGTCCCCCCGGAGCACCCTGTGACCACATCACTGGGCAGTGCAGCTGCCCACCGGGCTTCACCGGAGCTGCATGCGAGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=31.0)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(63.0=65.9)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGGACAGTGCCAGTG
R:
GTGTCTCGCATGCAGCTCC
Band lengths:
183-1047
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]