DreINT0014414 @ danRer10
Intron Retention
Gene
ENSDARG00000074808 | MEGF6 (1 of 2)
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr11:41117148-41117816:-
Coord C1 exon
chr11:41117688-41117816
Coord A exon
chr11:41117277-41117687
Coord C2 exon
chr11:41117148-41117276
Length
411 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
TGTGTGTGTGTGTGTTGTAGCAT
3' ss Score
10.23
Exon sequences
Seq C1 exon
AGTGTGAACGGGGCTGGTTTGGCGTGGGTTGTGAGGACCGCTGTCAGTGTGATCACGGTGCTGTCTGCCATCACGTGAGCGGTCAGTGTCTCTGCCCTGCTGGATGGAGAGGAAGACGCTGTGAGAAAG
Seq A exon
GTCAGCTCATTAAAAAAAATCAAATATATATAATAAATGACTTTATAAATATTATTACTAGAATATATTTCACCCATAATGAATAGTTAAATGTCATTAAATAATACATAATTTAAATTTCTTTAAATATTTATTTATTAATTATACATGTATTATGTTTGAAATGACATTAATTATATACGAGCAATTATTAAATATTTAATATATGTGAAACTGTACCTTTATTTGAAGTGTGTGTAACATATGTTGTGTCTCTGCATGTTGTGTGTGTGTGCATGTGTCGTGTGTCTCTGTGTGTGTCTGTCTGGGTGTGTAATGTGTGTGTGTGTGTGTTTCTCTCTCTCTGTTGTCTCTTTCTTTCTCTCTGTCTCTCTCTCTTTCTCTGTGTGTGTGTGTGTGTGTGTGTTGTAG
Seq C2 exon
CATGTCTGCCGGGCTCATTTGGTCAGGATTGTGTCCAGCGCTGCTCTTGTCCGTCCGGCTCCTCGTGTCATCATGTGACCGGTCACTGTGGTTGTGCTCCAGGATTCACCGGCGACGGCTGTGAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074808:ENSDART00000109204:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(63.0=65.9)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(34.8=36.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGAACGGGGCTGGTTTG
R:
TGTGTTCACAGCCGTCGC
Band lengths:
257-668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]