GgaINT1018547 @ galGal4
Intron Retention
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7563980-7564432:-
Coord C1 exon
chr14:7564344-7564432
Coord A exon
chr14:7564104-7564343
Coord C2 exon
chr14:7563980-7564103
Length
240 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ACTTAAATTTAAACTTACAGAAC
3' ss Score
6.82
Exon sequences
Seq C1 exon
GATCTGGCTGCTGCAGAGAGAGCTCGCAAACAAGCAGATCTGGAGAAAGAAGAGATGGCAGAGGAACTTGCAAGTGCTAATTCTGGGAG
Seq A exon
GTAAGAATAGACTGCATTATATTCAGAGCTGTAAGCACGCTACTGAAAATTGCATGGTTGCCAAGAGAAGGTATATGCCTGTCCCAGCAGACATCCAGTCTTAACAATACAACATGTGCACATCTGACTGGTTTCATTATCTGATTTTCTTTTCTTTGTGAATTATAGGTAGTTCCTAATAGCTTCAGACATATTCAATTGGTCACAGCCATAACTATATACTTAAATTTAAACTTACAG
Seq C2 exon
AACAAGCCTACAGGACGAGAAGCGGCGCCTAGAGGCAAGAATTGCCCAGCTGGAGGAAGAGCTAGATGAGGAGCACAGCAACATAGAGACAATGAGTGATCGCATGAGGAAAGCAGTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000010534:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGGCTGCTGCAGAGAGA
R:
CTGCTGCACTGCTTTCCTCAT
Band lengths:
213-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]