MmuINT0103283 @ mm9
Intron Retention
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14203206-14204506:-
Coord C1 exon
chr16:14204418-14204506
Coord A exon
chr16:14203330-14204417
Coord C2 exon
chr16:14203206-14203329
Length
1088 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AGCAGCTTCATTCCCTCTAGGAA
3' ss Score
7.94
Exon sequences
Seq C1 exon
GACCTGGCAGCAGCTGAGAGAGCTCGCAAGCAAGCTGACCTGGAGAAGGAGGAGCTGGCCGAGGAGCTGGCTAGCAGCTTGTCAGGAAG
Seq A exon
GTAAGGATATAAAAGAGGCAACTGGATTTGGGGTGTGAGAACAACCAGCCTGAGTGTGCCCTGGAGCCCCCACTTCAATGATAGCAAACCCAATGCTCACTAAGCCCTGACCGGACAGACCCATGCTGGGAAAAGGATTGACCTCAGGGCTTTCCCACCTACTGGTTTGGAAACGTGGCACTTCATTGTGAGTGAGTAGTGGCAGGGGCAAAGAAAGTCAGAGGTGATTGTTCCCACCTCATCCTGGCTTTGCTCATCTGTCTGTGTGAGTCCCAGCTCACCTCTTCCTGGCAGGATGCTGTGTTATGGCTCAAATACTCAACAGATGTTTAAAGGAGAAAGCTTATTTTAACTCATGGTTTCAGAGGATTCAGCCGAAGGCTTTGCTGATCCTTAGGCTAGTACAGAGCATCATAGTGACGAATGCACACTGAAGAGGCTGTTCGCTTCAAGGTAGACAGAAAACAGTGTGAATCGAGAAGGGAGTGGAGGGGGGATGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTACAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATAGGATCTGATGCCGCCTTCTGATGTGTCTGAAGACAGCTACAGTGTACTCATATACATAAAATAAATAAATAAATCTTTTAAAAATTTTTTAAAATTGCATTAAAAAAAAAGTGGAGACCCCAAGGATACAAGTCCCTGTCCCTCCTATGACCAGCTTCTTCCAACAAGCCTTCATTTACTGCTTTTCACCATCCAGGAATTCTATCATGTCCTGAAGCCACCACGGAATGGATCCACTTATTAAGCCAGAGCCTCAGAATCTAGTCATTTACCAGAGCCGATCAGTTGATAACTGAGCCCCCAGTGCATGAGCTTGTGAGGGACATTTCCCATTCAAACCATGATACAGGTGACCGTGGGTGACTCTGGTCTCCCTTGAGCTTGTTTTCCCAGTTAGAGAATGAGGGCCACCTGAGACAACACCTTTCTAGGGAGAGAGGCTTAAGACTGGGGAAGGCCCATGGGTCCCCAAAGCAGCTTCATTCCCTCTAG
Seq C2 exon
GAATACACTGCAGGATGAGAAGCGCCGCCTGGAGGCAAGGATCGCCCAACTAGAGGAGGAGCTGGAGGAAGAGCAGGGCAACATGGAGGCCATGAGTGATAGAGTACGCAAGGCCACACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830-Myh11:NM_013607:36
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.976
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCAGCAGCTGAGAGAG
R:
AGTGTGGCCTTGCGTACTCTA
Band lengths:
207-1295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: