GgaINT0105110 @ galGal4
Intron Retention
Gene
ENSGALG00000012533 | MYH9
Description
myosin-9 [Source:RefSeq peptide;Acc:NP_990808]
Coordinates
chr1:51662496-51662911:+
Coord C1 exon
chr1:51662496-51662584
Coord A exon
chr1:51662585-51662787
Coord C2 exon
chr1:51662788-51662911
Length
203 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
AATGTTCGTGTGTCCTACAGAGC
3' ss Score
9.21
Exon sequences
Seq C1 exon
GAACTTGCAGCTGCTGAGCGTGCCAAGCGCCAGGCCCAGCAAGAAAGGGATGAGCTGGCTGATGAGATTGCCAACAGCAGTGGTAAAGG
Seq A exon
GTGAGCGATGTTCCCTGCTCGAGGGTGGGGGAGCTGGTTGGAGAAAATACTTTGCAGACTGTTGTTTTTATATAGACTGCAGTATGTACTGCATCCTCTGTGCTTTCAGAAGACAGAGCTTATTTTATAAAATTAGAAGTGGCAGGTTTTCCCCCAAGGCATTAATGCTGCCAACATCACATGAATGTTCGTGTGTCCTACAG
Seq C2 exon
AGCGCTGGCCATGGAGGAAAAGAGACGCCTGGAGGCTCGGATAGCACAGCTGGAGGAGGAGCTGGAGGAGGAACAGGGCAACACTGAGATAATCAATGACCGGCTCAAGAAGGCAAATCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012533:ENSGALT00000020472:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.857
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTGCAGCTGCTGAGC
R:
TGAAGATTTGCCTTCTTGAGCCG
Band lengths:
212-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]