DreINT0099748 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7491233-7493956:+
Coord C1 exon
chr6:7491233-7491321
Coord A exon
chr6:7491322-7493832
Coord C2 exon
chr6:7493833-7493956
Length
2511 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTGTGCTTGTTTTTGTTCAGGGC
3' ss Score
9.27
Exon sequences
Seq C1 exon
GATCTGGCATCTTCAGAGAGAGCCAGACGCCACGCTGAGCAGGAAAGAGATGAACTTGCTGATGAGATCTCCAACAGCGCCTCTGGAAA
Seq A exon
GTAAGTCTTTGCTCTGTAAACTTCTTGCAGTGCATGTTTAGTTTAGTTTATTTGTTTACAGGGACAATGCACATTAATAAACACTAAAATGTGCCAGAAATAGTCAAGAATGGGTATTTTTAATTTGTAGACCCTTAACAGAATATTAAAAAAGTCATTCATTCATACATTTGATACATATCAGAGGTCACCACAGCGGAATGAACCACCAACTATTCCAGCATATGTTTTACACAGTGAATGCCCTTCCAGCTGCAACCCAGTACTGGGAAACACCCACACACTCTCACATTCACACACTCATACACTACAGCCAATTTTTGCTGACCCAATTCACCTGTACCACATGTCATTGGACTGTGGGGGAAACCGGAGCACCCGGAGGAAACCCACACCAACACGGGTGAACAAACTCCACACAGAAATGCACACTGGTCCACATTAAGCTGAAAGTGTTCTTCAATGTTGTTTCTGTTGTTTGCTCCAGCTTACCGTTGTTATTTCCGTCATCAGCACAGTTCATTTACGTCTGTGCACGCCATTCGTGTGTATCCTGATTTGAGTGAATGACGATTTGAACACTCCAACACTCCAAAACAAAAGGTCCCCTAGTTTGTGTGCATCCACCATAAACATTAACACTAATGGTGAATAGAAGTTCCTACAATAGGTTTGCATGCTTTATTGTGTAAGAGCCCTGGTGATCTTCCCAGGCTGTTTTAAACACTATTTCTGAGGGGAAGCTTCAAGCTTATGATGGCAAACAATTGTTTTCTGTCAGTTGACTTGCATAGATCAATTGCATAGTTTAAAACTTGCTGGAAATGGTGTGAAATTTGATGCATTGTGAGTTTTGAAAGTTATTTTAGTATCTCTTGCAAAGTACAATTAGATTTTTATTATGCAAATGTTGATTAAATACCATCAGAATTCATAGATTATGTAATGGAATGTTTAAATGTAGTCAACTGCAGTCTAAGGAATGCATAAAATATTCCTTTCTAATTTCCAAACTTATGCTTCTGAATAAAATATATATATATAAATAATGTTTGAATATAATAATAGACCTTTGAAATACAGGTTTGCATACATATTAACATTCAGCTGTTGTGAGAGAGAACATCTTTATCTTTAAGACAACTTAAAACAGTTATTTACCAAAGAGAGTTATTACAGGGTGTCCGCGGGGTCCTAAAAAGTATTAAAAGTTGATAAATCAATGTAGAGAAATTAAAGCCCCTTAAAACGTATTAAAGTCTTAAGCTATTTTGCAAGGTATTAAATCTGAGAGCATTTTTGATTATGCAACGTATGGTTATATGCTAAAGTTTGCCTGAATTAAATCTGTGAATATCAAGCTGCTTTGTTTTACTGCAGTAACCAAGGCATCACCATTATTTCTGCAGTTCTACATGCGCAAACCTGCTGAATCAGCTAGATTTAATATATTTTTATCGAGTATATGAATGATGTTTTAGTTTTGGATTAATTTCTTACATAAATATTTTGTAAATATCCTGCGTGTGACAACATGCCAAGGATGTTTTTTTTCTGTCTCTGTGTGCATTAAAAACCAAATCAAACCCATTTATTTTCATGCTCTAATAAATTTATCCTGTCTGGTTGGCACCAATAGCCTAGTGGTTAGTGCATCGACTTATAGTACCCAGGTTCTCGTGGCAACCCGAGTTCGATTCCTTTGCGGATCCTTCCCCTCTCTCTGCTCACCTTACTTTACTGTCTGTAAATCTCCACTGTCCGGTCATTAAAGGTGAAAACCCCAAAACAAAAGTATCCTGTCTGCTCTTATAGATGTCAACATTGTTTGAATGTTTTATTAAATATACAGTAAATGTTTACTAACTTGTATCCGTATGGCTTGATCAGTAAGTTCTAAATAATTTTTTTTACGTCTAACCTCCCATCCACAGAGGAGATACAATCTGACAGGATCTCTTCAGAAATCATCACATTTTCTTATTTTAAACGTTGTCAATAAAGTCTAATGATTATTGTCGTAGTTTTTCAAAAACATGTCTTAAACTCACTGAAATATTGTCTTGGAGGTCTTAAATCGTTTTAAGCAAGTCTTAATTTTCCATTGTTTATGTAAAGCTAGCCAATCAATTCAACATCTCAATAAAACTATTTATAACTAACACAGTAACAGTCTGTTGTGCATGCATTTAGTTTTAAAAGATTTTATGAAAGTTTTGTTGAAAAAAATGTATGCATACAACTAAGATCTGCTTGCTTTGACACATTATTTAAAATATGTGGCCAGGATATTATTTATTTTTGCTGGGCCATTAAAGCAAATCCTTTGTGTTTAGCCGGGTATAAGTTTAAAATGTCATCTTTATGGTCTTAAAAAGCTCTTAAAGTCTTACATTTGACTTGGTGAAACCTGCAGAAAGCCTGGTTTAGGTATTGTGCAGTTTTCATCTGTAATAAAGTCAGATTATTGAACAATGACATGAACAAGCATTTGTGCTTGTTTTTGTTCAG
Seq C2 exon
GGCAGCCCTGTTGGATGAGAAGAGGAGACTGGAGGCTCGTATCGCTCAGCTGGAGGAAGAGCTGGAGGAGGAACAGAGCAATATGGAGCTCCTGAACGACCGCTTCCGCAAGACCACTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]