RnoINT0096331 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55400612-55401490:+
Coord C1 exon
chr10:55400612-55400700
Coord A exon
chr10:55400701-55401366
Coord C2 exon
chr10:55401367-55401490
Length
666 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
CGCCCCTTCCTTGTGCCTAGGTC
3' ss Score
10.45
Exon sequences
Seq C1 exon
GAGCTGGCCTCATCTGAGCGAGCCCGCAGACACGCAGAGCAGGAGCGAGATGAGCTGGCTGACGAGATTGCCAACAGCGCCTCTGGGAA
Seq A exon
GTGAGTCTCCGGGCAGCAGGCAAATGGGATGGGACTAGGAAGCAGCAGTGCTTAGCCTACCCTCTGCGCAAGCATGGTTCTCTGCCCTCAAGTGCGTGCAGCTGCACAGGCTAAGGACAGCCGCCTGACATCTAAGAGCGAGTGGGCTGGCTCACCTCTTCAGGTCTAAAAGGATGACCACAAGTCTGGGCAACCTCAGCCACACATAGGACACCACCTCCACATGCCCATCACACACAGGCCACACAAGCGTGTGCCCCTGTGCCAGTCCCAAAGGCCTTACAGCATAGACATCCATAGACTGCACTCCCCTAACACTTAAGGCCTCACTTTCTGATTCACTGGCTTGGCAAATAGCTTCCTCACCATCTTCATCTGAATTTCCTTAAAGTTTCTCTTGGGAGTGCTGGGACATCATTAGAGTCCATGCCCGTGACTACAGGGTCTCATCTAAGATCCTCCTGAATTCTAGAGGCAGTCAGCAACAGGGAGGTCCTGGGAAGTCACACAGTGGTTCAGAGGACAGGACCAGGAAGACAGACATGGGCAGGAGGGCACTGTTGAGGTGGGGCTCATCCACAGCTCAGGGGTAGATGCAGGGACTAATCTGGAGCGAAGTGCTCAGTTCTCAGCTGTGCTCTGTGCACGCCCCTTCCTTGTGCCTAG
Seq C2 exon
GTCCGCTCTGCTGGATGAGAAGCGGCGCCTGGAAGCCCGGATCGCGCAGCTGGAGGAGGAGCTAGAAGAGGAGCAGAGTAACATGGAGCTGCTCAATGACCGCTTCCGCAAGACCACGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGCCTCATCTGAGC
R:
GAGCGTGGTCTTGCGGAAG
Band lengths:
210-876
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]