GgaINT0127267 @ galGal3
Intron Retention
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1692711-1693071:-
Coord C1 exon
chr18:1692983-1693071
Coord A exon
chr18:1692835-1692982
Coord C2 exon
chr18:1692711-1692834
Length
148 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
CCCCATTGCTTCTCTCCCAGGTC
3' ss Score
8.98
Exon sequences
Seq C1 exon
GAGTTTGCTGCATCTGAGCGAGCCCGTCGTCACGCTGAGCAAGAAAGGGACGAGCTGGCTGATGAGATTGCAAACAGTGCTTCAGGAAA
Seq A exon
GTGAGTCATCAAATGGACTTCAGGCAGCAGCAGCTGCAGTTCTCAATAGCCTGTTTGCAAATTCTATGTTGATTTGTCTTCATGAATACAAAGCAGCTGGCTTTGCATCACACCTGAACGTGTCTTGACCCCATTGCTTCTCTCCCAG
Seq C2 exon
GTCTGCGCTGCTGGATGAGAAGCGCCGGCTGGAGGCTCGCATTGCACAGCTGGAGGAGGAGCTGGAAGAAGAGCAGAGCAACATGGAGCTTCTCAACGAGCGGTTCCGGAAGACCACACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.867 A=NA C2=0.524
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTGCTGCATCTGAGCGA
R:
GCAGTGTGGTCTTCCGGAAC
Band lengths:
211-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]