MmuINT0103242 @ mm9
Intron Retention
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68623662-68625226:+
Coord C1 exon
chr11:68623662-68623750
Coord A exon
chr11:68623751-68625102
Coord C2 exon
chr11:68625103-68625226
Length
1352 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
GGCCCCTTCCTCGAGCTTAGGTC
3' ss Score
4.42
Exon sequences
Seq C1 exon
GAGCTGGCCTCATCCGAGCGAGCCCGCCGACACGCAGAGCAGGAGCGAGACGAGCTGGCTGATGAGATCGCCAACAGCGCCTCTGGAAA
Seq A exon
GTGAGTCTTCCTCGACAGCAGGCAAATGGGAGGGGTGGCGTGGAAGCGCTAGCATTCGGCCTACCCTGTGCACAGGCTAGGCACAGTCACCTGACATCGCAGAGTAAGTGGGCTTGCTCATCTCTTCAGGTCTAAAAGGATGACAAGAAGTCTGGGCATCCTCAGCCACTGCCTGTCACACATAGGGCCACACACTCATATGCCCATGCACACACATGCGTGTACACCTGTGGCGGTAGGTGCCACTGGCCTTACAGAGTGCACATCCACAGACTGCCTGAAAGCCTTTGGAACAAGAGATAGAACTCTTAGTTCCTCCAGCACCATGGCTGCCTAGATGCTGCCATAGTGCCCTCCATAATGATAATAGACTGAACGTGTAAGCAAGCCTCAATTAAATATTGTCTTTTATAAGAGTTGCGGTGTTCATGGTGTCTCTTCATAACAATGAAACCTTAACTAAAACACCATAACATGTATGCCAATATTGCATCCTTGAGTATACCTTGATGTACTGGCCATTACCATAGCTCATGGGGCCCACAGATGGATAAGACTGTTGATAACTTTCCTCCTCTCAGGATCCTAAATTAGCCCCTTCTGTTACTATGAATGTTTTCCAGCAAGGAAAAAGCTTCCTTGTCAGTACCAATTTGATTTCTCCATGTTGTCATGTATAGGGTTTACCATAAAGTTACTATAGGAAATGTAAAGTGGCAATCAATAGTTGTTTTTGTTTGGATAGTTGCCAAGACACCACTGACCAAACCTGGCACCTGAGGGCCTCCCTTTCAGACTTGGCTTGGCTAGTAGCTTCCTTACAATCTTCCTTGGAGTTTCTTGGTTTTGTTTTTGTTTGGGGGTTTGTTTGTTTGTTTGTTTTTTTCTTTTTTCTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGGTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTTGGTTTGTTTGTTTTTAATGATTTCTTTTGACCAATTAAGTTGCTTTCTCCTTGGGAGTGCTAGGACATTAGAGTTCATCCAAGATCTTGGCCAAATTCTAGAGGCAGAGTTAAGCAGCAGAGAGGTCACCACAGTGGTTCAGAGGACAGTGCAGGACCAGGAAGGCAGATTTGGGAAGGAAAGAGAACTGTCTGAGGGTGGGGCTTACCCACAGATCAGGGATAAATGCAGGGACTAATCGGGAGTCACACTCACAGTTCTCATCCTATGCTCTGTGCTCGGCCCCTTCCTCGAGCTTAG
Seq C2 exon
GTCTGCGCTGTTGGATGAGAAGCGGCGCCTGGAAGCGCGGATCGCACAGCTGGAAGAGGAGCTGGAGGAGGAGCAGAGCAACATGGAGCTGCTCAATGACCGCTTCCGCAAGACCACGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900-Myh10:NM_175260:36
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCTCATCCGAGCGAG
R:
CAGCGTGGTCTTGCGGAAG
Band lengths:
207-1559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: