HsaINT0107986 @ hg38
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:7579]
Coordinates
chr22:36285658-36285953:-
Coord C1 exon
chr22:36285865-36285953
Coord A exon
chr22:36285782-36285864
Coord C2 exon
chr22:36285658-36285781
Length
83 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TTCTCCCGCCCACCCCGCAGAGC
3' ss Score
9.33
Exon sequences
Seq C1 exon
GAACTGGCAGCCGCGGAGCGTGCCAAGCGCCAGGCCCAGCAGGAGCGGGATGAGCTGGCTGACGAGATCGCCAACAGCAGCGGCAAAGG
Seq A exon
GTGAGCTGAGTGAGGGGGCAGAGTTGGGGGGGACCAGGTGTGTCCCCAGGGTAGGCCCCTCACTTCTCCCGCCCACCCCGCAG
Seq C2 exon
AGCCCTGGCGTTAGAGGAGAAGCGGCGTCTGGAGGCCCGCATCGCCCAGCTGGAGGAGGAGCTGGAGGAGGAGCAGGGCAACACGGAGCTGATCAACGACCGGCTGAAGAAGGCCAACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345:ENST00000216181:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.595
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF131661=AAA_13=PU(18.4=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGAGCTGGCTGACGAG
R:
CTGCAGGTTGGCCTTCTTCAG
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development