GgaINT1018579 @ galGal4
Intron Retention
Gene
ENSGALG00000012533 | MYH9
Description
myosin-9 [Source:RefSeq peptide;Acc:NP_990808]
Coordinates
chr1:51642436-51643666:+
Coord C1 exon
chr1:51642436-51642609
Coord A exon
chr1:51642610-51643492
Coord C2 exon
chr1:51643493-51643666
Length
883 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
3' ss Seq
GGATGCTTCCCTCTTTTAAGGCT
3' ss Score
6.65
Exon sequences
Seq C1 exon
CTGAACTCCTTTGAGCAGTTGTGTATCAATTACACAAATGAAAAGTTGCAGCAGCTCTTTAACCACACCATGTTCATTCTGGAGCAAGAGGAGTACCAGAGGGAGGGCATAGAGTGGAATTTCATTGACTTTGGCCTGGACCTGCAGCCCTGCATTGACCTCATAGAGAAGCCG
Seq A exon
GTAAGAAGCTCGTTCTCCTGTCCTTGAACAACAAGAAATGGCTGCACTAGCTGCGTCATAGAAAAGCTAGTCTCCGTATACAGCTAGCTTTTGTAATCCTCTACTGACACTGTGGTTTGATAAGAAGCAGAAATGAACAGTTTTCTCTTGGTTTGAAAGTATGTTGTCAATAAAACTGGTAGTATCAGTTCTGTAGGAAGTACTGCATGCAAACAGATCACCTTGTCACCCATTTTTTCTTCTCAGAACATTATCTTTGTGTAGAACTGCATGGTGCTAGCTGCATAAGTGCAATTTAGCTTAAGTAGTGTGAACTTCCTTTGTTGCTTACAAGCGTGAAGAGAGGCTGTGAACCTCTATTGCTTTCACTTGGAAATTCACACATTTCACAGTAGATGTTCCAGTAGTAGGAACTAGTTTCTGCAATTTTCTGCTCTGGTCTTCTGTAGTGTTCCTTTTATTAAAAAAAATACATTTTTTTCACTTAAAACACCCTGTACAAGTGTCATGAAGGAGACCTTCTATAAAAAAATGTTCAGAGGTTGTGGATGCATCCCTGGAGACATTCCAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGATCTGGTGGTTGGTAACCCTGCGCTTGGCAGGGGGGTTGAAAGTCAATGATCATTGCGGTCCTTTTCAACCCAGGCCATTCTATGATTCAATGATTTCACAAGAGGATCTTGAGAGATTATTAATAATTTCTATTACTATGGCAGCAGTTGAACTGATACCACAGGATGAGTGAATGTGACAGGGATCGTGGTTAGGTGTCCTTTTTTCCTAGCTGTCCAAGGGTTTTAATTACTGATACAGTCATGTTCTTAATGACGTTCGGATGCTTCCCTCTTTTAAG
Seq C2 exon
GCTGGCCCCCCTGGTATACTGGCCCTGCTGGATGAAGAGTGCTGGTTCCCAAAAGCAACAGACAAAAGCTTTGTGGAAAAAGTTGTACAAGAACAAGGCACGCACCCCAAATTTCAGAAGCCAAAACAGCTGAAAGACAAAGCTGACTTCTGTATCATACATTATGCTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012533:ENSGALT00000020472:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTCCTTTGAGCAGTTGTGT
R:
TGCCAGCATAATGTATGATACAGA
Band lengths:
345-1228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]