BtaINT0097395 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010402 | MYH9
Description
Bos taurus myosin, heavy chain 9, non-muscle (MYH9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192762]
Coordinates
chr5:75119840-75120871:-
Coord C1 exon
chr5:75120698-75120871
Coord A exon
chr5:75120014-75120697
Coord C2 exon
chr5:75119840-75120013
Length
684 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
3' ss Seq
CGATGCTATGCTCCCTCCAGGCA
3' ss Score
7.3
Exon sequences
Seq C1 exon
CTGAACTCCTTCGAGCAGCTCTGCATCAACTACACCAACGAGAAGCTGCAGCAGCTCTTCAACCACACGATGTTCATCCTGGAGCAGGAGGAGTACCAGCGCGAGGGCATCGAGTGGAACTTCATCGACTTCGGCCTCGACTTGCAGCCTTGCATCGACCTCATCGAGAAGCCG
Seq A exon
GTAAGAGCCTCGAGGCTGCGCCTCGCCCCATCTGTTGCTCCACCCCTCTGGGGACGGAACCATCGGTGATCCTAATACCGAATGGTTTACTTTGATGATGAGTTTTTTGTTTAAATCAGTTTTGTTTTCCAACAAACAAGTTCGTGTTTGGTTCCCAGGCCTGTCAGCCAGTCCCACAGTGCCCGAGTCTGCTCTCTTATAAACTCAGAGTTTGAAAGGCTTTGGGGCTCCGGGGCGCTTCCTCTTCCTCAGGAGCCTTATCCTCAATGTCCCCGCTCACCACATAGTTGTGTGGACACACTGTGTGTCGAGTGGGGTCCCAGAGGGACTCGAGGGGCCAGGACCCCTGTTGAGGGGCAGCCTCTGGACGTGGGTCAGGGGTCTGCATGGCCCATCAAGCCACCACATGATTTCCAGTGTTCTCATGGGAGAATCTTGCGATGGATCATTGGATTAAGGTGTGTTGGACATAGCCTAGACCTCAGAAATTTCTTTTTCAGCTAGAACTTGTAATTGGAGTGCTTTCAGTCATGCTCCTTATTTTTTTCTTGTGTGAGGAAAGCACTGCCCACCTTCTGGTGAGATTCTTGAGTTTCTGAAAACCAGGCTGTGACTTCTTTACGAGGGTGAGAGTCGGTGGGTTTCCAGGTCAAGCTGACCTGCGCGATGCTATGCTCCCTCCAG
Seq C2 exon
GCAGGCCCTCCTGGCATCCTGGCCCTGCTGGACGAGGAGTGCTGGTTCCCCAAAGCCACGGACAAGAGTTTCGTGGAGAAGGTGATGCAGGAGCAGGGCACCCACCCCAAGTTCCAGAAGCCCAAGCAGCTGAAGGACAAGGCAGATTTCTGCATCATCCACTACGCTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010402:ENSBTAT00000013737:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTCCTTCGAGCAGCTCT
R:
CCAGCGTAGTGGATGATGCAG
Band lengths:
343-1027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]