GgaINT0015059 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7645071-7645610:-
Coord C1 exon
chr14:7645437-7645610
Coord A exon
chr14:7645245-7645436
Coord C2 exon
chr14:7645071-7645244
Length
192 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
TGGTATTGTTCACATTGCAGACC
3' ss Score
6.98
Exon sequences
Seq C1 exon
ATCAATTCCTTTGAGCAGCTGTGCATCAATTACACTAATGAGAAACTTCAACAGCTTTTCAACCACACAATGTTTATATTGGAGCAAGAGGAATATCAGCGTGAGGGCATTGAATGGAATTTCATTGACTTTGGCCTTGACCTGCAGCCTTGCATTGAGCTAATTGAAAGACCC
Seq A exon
GTAAGTTTTTATCTATATAGATGGGATACTACGTAGGTTTCATCAGGGTCCATTATATATCAATATAAGTACCATTTAAGATATTTCAGATTGTTGTTGCCTGGGAGGATTAGTAACAAAGTAAAAAGAAGGCGGTGGTCTTTCTTCATCTCCAGCTTTGATTATACTGATCTGGTATTGTTCACATTGCAG
Seq C2 exon
ACCAACCCCCCGGGTGTCCTAGCTCTGCTGGATGAAGAGTGCTGGTTTCCCAAAGCTACTGACACTTCCTTTGTGGAAAAACTAATTCAAGAACAAGGCAACCATGCCAAATTCCAGAAGTCCAAACAACTCAAGGATAAAACTGAGTTCTGCATACTGCACTATGCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATTCCTTTGAGCAGCTGTG
R:
GGAAGTGTCAGTAGCTTTGGGA
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]