RnoINT0096346 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:812381-814456:+
Coord C1 exon
chr10:812381-812554
Coord A exon
chr10:812555-814282
Coord C2 exon
chr10:814283-814456
Length
1728 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
CTGCCTTCCTATATGCCCAGAAC
3' ss Score
6.07
Exon sequences
Seq C1 exon
GTAAACTCCTTCGAGCAGCTGTGCATCAACTACACCAATGAGAAGTTGCAGCAGCTGTTCAATCACACCATGTTCATCCTGGAGCAGGAAGAGTACCAACGAGAGGGCATCGAGTGGAACTTCATCGACTTTGGCCTGGACCTACAGCCTTGTATTGAACTGATTGAGCGGCCG
Seq A exon
GTGAGGGGCTGGCTGGCACTGTGCGTGCATGGCCCATTTGTACACACCTAGACAGAAAATGCTTTCCATGTGGACAGTGTTTCTGGGCAAGTCTTGCAAGGCTGTAAATGAACTCCTTGGGAAGTAGGCCATGCTTTCTGTTAATCCAAGTTACAATCAACATTTTTTTCTTTGTTTTGTTTTTTCTTTGTTTTGTTTTCATCTTTGTTTGTTTTGTTTTATTTTTACACCACCCTTTTTGAGCTAACTCACCTGGAACTCAGTATATAGACAGAGGCTAGCCTCTAACTTAAGAGTCCTCCTGCCTTAGCCCCACAAGTTAGTCATACTGTTCCTGAGTGAAATAATTATTTTAACAATTCTAGGCTTTCAACCCAGGACCTTGCCTACACTAGGCAAGTGCTCTTTCATTTAAAGTTTAAAGATAGTTTTATTCGTCTATATAAATTTTTTTGAGATAGAGTCTATTGTAGACCAGGTTGGCCTCAAACTTACTATGTAGTTGAGGATGACTTTGATCTTCCTGCCTCCAACTCCCAAGTGCTAGGATTGCAGGTATATACTGCCTCACCTGGTTGACACATGACTATGACAATCCTTCTGCCTTGGCCTTTCTGTGCTAGGATTAGGGTGTACATCACCATGATGTAATTTCCCCTTTCTTTCTCTTCCTCTCCTCTATTTATTCATTCCCAAAGAGTCTATGCTTTGTCCACTGATATATCCTAAACTTCTAGAGCCACAGTAGACTAATAGTCACCATGTGCTGGGCCTTCTCTTCTAGGGTTGGGGCTGTAACTATGAACAAGATGGGCATGGACCCTCACCCCCTGGAAGGGCTGGTGGCGAAACCAAATGACACTCCTGGCAAGACACTATGGAAGACAATCAAAAAAAAAAAAAAAACGGTTTTATGTGGTGGAGTCCTCAAAATGGAGATAGTTTCCCCAGGGTGAATGATACATAGCTCACCTAAATTTAGATCCTCTCAAACACAGAAAGGCTTTGCTGAAATGGATCCTGGGTAAATTTATAAGGAAGCAAAGTGATAGATTCATTTGAAATTCTTGTATAATCTTAACTGGGTATGGTGGTTCACACCTATAATCCCAGCACTTGGTAGGCTGAGACAGGAGGATTGCTGCAGGTTTGAGACTAGTGTTAACTGGATAGTGAGTTCTGGCAGTCTGGGATATAGTGTCTCAAAGTGTATATGGGAACCTGAGATACAAAATAAACCTAATAAAACAGGATCCACGGTAGAGGGCTTGCCTAGCTGGCTCTAGGCCCTGAGTTCCATTTTTCCCTCGAGCTGGGAGAGAAGAATGCAATCTTTGCGTATTTCCCAGTATGGGTATCAGCAAGCACTGTGTCCTTTTGGTTCTTGCTTCCAATCCCTCAAGCTGTCTATTGACAGGAGTGTAATGGTTTAATAGATTTGATGTGGAAGAAAGAGGGTATGGATTTACCTTAGATATAAGCAAAATGCAGTAGCAGTGCCAGCAGGACTCCTGTGAGTAACCTTCAACGTAACTCAGCCTGGCCTTGAACTTGTTTGTAGCTGAATTAGCATTGAACTGATTCTCCTTGCTTCTGCCTCTCACATGTCAAGGCTTCAGTCCTATGCCACCACACCTGACAATATGTGTGGAATATGTATGGTTGACCCTTCCTGATGAGCCTGGGGTCCTCCTGCCTGGTGGTGACTCTGCCTTCCTATATGCCCAG
Seq C2 exon
AACAACCCTCCTGGTGTGCTGGCCCTGCTGGATGAAGAATGCTGGTTCCCCAAAGCTACGGACAAGTCTTTTGTGGAGAAGCTGTGCTCAGAGCAGGGCAATCACCCCAAATTTCAGAAGCCCAAGCAGCTAAAGGACAAAACAGAGTTCTCCATCATCCACTATGCTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTCCTTCGAGCAGCTGTG
R:
CTTCCCAGCATAGTGGATGAT
Band lengths:
346-2074
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]