GgaINT1018590 @ galGal4
Intron Retention
Gene
ENSGALG00000012533 | MYH9
Description
myosin-9 [Source:RefSeq peptide;Acc:NP_990808]
Coordinates
chr1:51633585-51634432:+
Coord C1 exon
chr1:51633585-51633677
Coord A exon
chr1:51633678-51634368
Coord C2 exon
chr1:51634369-51634432
Length
691 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
TGCCAATAACTTCCTTTCAGGGC
3' ss Score
8
Exon sequences
Seq C1 exon
GGGGAACTAGAGAGGCAGTTACTCCAGGCTAATCCCATCCTGGAGGCCTTTGGAAATGCCAAGACTGTAAAGAATGACAACTCCTCAAGATTT
Seq A exon
GTGAGTATTACTATCCAGCATGATTTCCAGTATGCTGAGCTTTTCAGAGGGAGGACTTTTTCTGGTTTTGAGTGCAGTGCTGTTCTGGGATAGGACAGCTATCTGTGTGACTTCCTTGAAGTTAATCTGGGAACGGAATTTCATTCAGTGAATTATAAAGAAAATACTTCTGGTAGATCTCTAGTATGAAGGAACCTGATCCTGTGCCAGGACTATTTGCACCAATTTTTATCCTCAGTTTATTACAGTCGGTTTTCTCCTGGAGAGCAAATAGCAATCCTTATTTTGCTTGCTCTGGAGAGATGGACAAGTGTCTGAGGCAGACTGAGAAGCCAGAGCTGGAGCTAAATGGAAATGGTTGGTGCTAGGCATTGAGGGAAGCAGAACTGTTTGAACCAGATAGCACAGAAAACTGAAAATGCAGTAGTTGTGGGAAATCTAGGTTGAAACATAATTAACTTGAATTGTAGGCTGTCCATCCTTATTTAAAGGTGTTTGGTGCCTTGTTCATTAAATCACTGTCGCGATCAGTAGACTTTGCCTATTGGCTGATCTTATGTTTTGCATAAAACTTGTCTGACCTGTTCTGAATTTCCTTTCCTATGTTAAAAAGGCCAGGTTAGCATTTGCTGCTTATTGCAATTACTGGATAGGTTGAATACTAACCTTTTTGCCAATAACTTCCTTTCAG
Seq C2 exon
GGCAAGTTCATCAGAATCAACTTTGATGTCAATGGTTACATTGTTGGTGCCAATATTGAGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012533:ENSGALT00000020472:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]