MmuINT0103720 @ mm10
Intron Retention
Gene
ENSMUSG00000022443 | Myh9
Description
myosin, heavy polypeptide 9, non-muscle [Source:MGI Symbol;Acc:MGI:107717]
Coordinates
chr15:77791716-77792346:-
Coord C1 exon
chr15:77792254-77792346
Coord A exon
chr15:77791780-77792253
Coord C2 exon
chr15:77791716-77791779
Length
474 bp
Sequences
Splice sites
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
3' ss Seq
CTGTATTTGTCTCTCCTCAGGGT
3' ss Score
11.73
Exon sequences
Seq C1 exon
GGGGAGTTGGAGCGGCAGCTGCTACAGGCCAACCCTATCCTAGAGGCCTTTGGAAACGCCAAGACGGTGAAGAATGACAACTCCTCTCGATTC
Seq A exon
GTGAGTACCAGCTGGTGGCACCCTGTTCTCGGGAGACAGGGCGCTGGGCACGTATCTTGGCACTATGGCTTCCCACCTGGTGCTTTTACCCCAAACAAAGACTTGAGGTTTTGTTCATTTCTCCAGTTGGTGTTCAAGTTCCTGTCAGCATGGCCCTGCCCTTCCCCCTCTTAGTTAGAATGACCACAGCCTTAGAATGATCACAGAAGATGGGACAAGCCAGTGAGGGAGCATTGTCCGTGCCCTGTCATACCAGCGGCCAGTGGGTTCCCAGGGTCAGGTCACATGGGACCATGACAGGCAGGAGCCCACCCCAGGCTGGGCACATCGATCAGCCTAGTACCTATGTTGGCTCAGCTTTTAAAACACAGAGCTTCTGGTCTTCCTCAGCCTCTGGGTACAGGAACCGGGCTGGATGGAACCCCTTGTTCCCTCTCTCTGAGATTTATGTCCTCTGTATTTGTCTCTCCTCAG
Seq C2 exon
GGTAAATTCATTCGTATCAACTTTGATGTCAATGGCTACATTGTTGGTGCCAACATTGAGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022443:ENSMUST00000016771:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types