GgaINT1018677 @ galGal4
Intron Retention
Gene
ENSGALG00000005644 | MYO1G
Description
unconventional myosin-Ig [Source:RefSeq peptide;Acc:NP_001026132]
Coordinates
chr2:4042312-4042796:+
Coord C1 exon
chr2:4042312-4042426
Coord A exon
chr2:4042427-4042625
Coord C2 exon
chr2:4042626-4042796
Length
199 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGG
5' ss Score
4.51
3' ss Seq
GGTGCCCCCTGCCCTCCTAGATT
3' ss Score
7.83
Exon sequences
Seq C1 exon
CTTTGAACAGTTCTGCATCAACTACTGCAACGAGAAGCTGCAGCAGCTTTTCATCGAGCTCATCCTGAGGCAGGAGCAAGCGGAGTACCAGCGAGAGGGCATCACCTGGCAGAAT
Seq A exon
GTGAGGGGGAAATGGGGACACGGCGAAGACATGGGAGGGACCTGGGGGGACACAGGTGTCGTCACCTGACACGGCATGAGGGGCAGACAGGAACACAAGGGGACATGGGGAACACCTTCTGGCAGAGTGGGATTTGAGGTGCCAGGGGGCAAATGAGGGTGCATGGGGCGCAACCCGGGGGTGCCCCCTGCCCTCCTAG
Seq C2 exon
ATTGAGTACTTCAGCAACGAGCCTATCGTGGAGCTGGTGGAGCAGCCGCACCGTGGCATCCTGGCGCTGCTGGACGAGGCCTGCTTGGCTGTGGGGACCGTCACTGATGCCCTCTTCCTGGCCAACATGGATGCCCGCCTGGGCCACCACCCACACTACAGCAGCCGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644:ENSGALT00000009051:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCTTTTCATCGAGCTCA
R:
CTTACGGCTGCTGTAGTGTGG
Band lengths:
245-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]