RnoINT0097138 @ rn6
Intron Retention
Gene
ENSRNOG00000059140 | Myo1g
Description
myosin IG [Source:RGD Symbol;Acc:1306016]
Coordinates
chr14:86790135-86790586:-
Coord C1 exon
chr14:86790472-86790586
Coord A exon
chr14:86790306-86790471
Coord C2 exon
chr14:86790135-86790305
Length
166 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
TCTGGCCGTCTCCACTTCAGATC
3' ss Score
9.44
Exon sequences
Seq C1 exon
CTTTGAGCAGTTCTGTATCAACTACTGCAATGAGAAGCTCCAGCAGCTCTTTATCCAGCTGATTCTGAAGCAAGAGCAGGAGGAGTATGAGCGAGAAGGCATCACCTGGCAGAGC
Seq A exon
GTGAGTACCTGGGCTGGGGGAAGAGGGGAGCTGGCGGCAGTCAGGGAGGGGGCCTTAGGAGCCTCGTGTGACCTGAGGGTGCTAAGCCAGCTTCGTGCAGGGGGGACATGACTGGCTGGTGTTGGAAGGTTCTCTAGGGCCTCCCTTCTGGCCGTCTCCACTTCAG
Seq C2 exon
ATCGAGTACTTCAACAACGCCACCATTGTGGAACTTGTAGAGCAGCCCCGCCGAGGCATCCTGGCTGTACTAGATGAAGCCTGCAGCACGGCAGGCCCCATCACTGACCGGATCTTCCTGCAGACCCTGGACACACACCACCGCCACCACCCACACTATTCCAGCCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059140:ENSRNOT00000092021:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAATGAGAAGCTCCAGC
R:
GCTGGAATAGTGTGGGTGGTG
Band lengths:
257-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]