GgaINT0143037 @ galGal3
Intron Retention
Gene
ENSGALG00000000674 | MYO1D
Description
NA
Coordinates
chr27:1399814-1400354:+
Coord C1 exon
chr27:1399814-1399928
Coord A exon
chr27:1399929-1400183
Coord C2 exon
chr27:1400184-1400354
Length
255 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TCTTCTTTTGGCTTTTCCAGATC
3' ss Score
11.47
Exon sequences
Seq C1 exon
TTTTGAACAGTTTTGCATTAATTACTGCAACGAGAAGCTGCAGCAGCTCTTCATTCAGCTGGTTCTGAAGCAGGAGCAGGAGGAGTACCAGCGGGAGGGCATTCCCTGGAAGCAC
Seq A exon
GTGAGTGATTTGGCAGGGGAGAGGTTGGTGGACCAGCACCAGGTCTGAGGCTCCTGGAGTAGGCTCCTCTTGGAGCCGATAAGACATCCATGCCCATGCCAGCGGTGCTGTCTGGAAGTCGGGCTGTGGGAAAAGCTATCCCATGGGTGGTGGCTCCTGTCCTCCAGGCAAATGGTGCTGCTCCGTCACTGGGTGGCATTGGGTGCTCTTGTGCCAGCCAAATCACAGCTGCCCCTCTTCTTTTGGCTTTTCCAG
Seq C2 exon
ATCGATTACTTTAACAACCAGGTGATTGTGGACCTGGTGGAGCAGCAGCACAAAGGAATCATTGCCATCCTGGACGACGCCTGCATGAACGTAGGGAAAGTGACGGACGAGATGTTCCTGGAGGCTCTGAACAGCAAGCTGGGGAAGCACGCACATTTCTCCAGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000674:ENSGALT00000000956:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTTTGCATTAATTACTGCAACG
R:
TCTGCTGGAGAAATGTGCGTG
Band lengths:
277-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]